View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11214_low_7 (Length: 464)

Name: NF11214_low_7
Description: NF11214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11214_low_7
NF11214_low_7
[»] chr4 (2 HSPs)
chr4 (15-261)||(31606058-31606328)
chr4 (315-372)||(42563744-42563801)
[»] chr5 (1 HSPs)
chr5 (15-261)||(12632807-12633078)
[»] chr1 (1 HSPs)
chr1 (15-260)||(45291439-45291699)
[»] chr6 (3 HSPs)
chr6 (191-254)||(25571921-25571984)
chr6 (191-254)||(26006389-26006452)
chr6 (191-254)||(26125154-26125217)
[»] chr7 (1 HSPs)
chr7 (191-254)||(45047748-45047811)
[»] chr2 (1 HSPs)
chr2 (191-254)||(23362974-23363037)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 31606328 - 31606058
Alignment:
Q  15 gatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaacaa-------------tatttcttggagg 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |             | |||||||||||    
T  31606328 gatgggttagagggttggactgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaataggtctgaaaatgatgtttcttggagg 31606229  T
Q  102 gaaattaagcaatttaaattttgttggttaaaagtgaattttgataatttaaaagtgggtgaaaatgatgtttttgatccaacttactaaaa-------- 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||            
T  31606228 gaaattaagcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatgtttttgatccaacttactaaaaatgacgat 31606129  T
Q  194 ---atgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattgaagcaaa 261  Q
       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31606128 aaaatgagattataaaatatgatgatttattgtaggtggcttagaattttgacacattggattgaagcaaa 31606058  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 42563744 - 42563801
Alignment:
Q  315 ctaacgtttgcataggtttgaagagttaaatggccatgcaatggagatttgtgtacca 372  Q
    ||||||||||||||  |||||||||||||||||  |||||||||| ||||||||||||    
T  42563744 ctaacgtttgcatatatttgaagagttaaatggtaatgcaatggatatttgtgtacca 42563801  T

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Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 12632807 - 12633078
Alignment:
Q  15 gatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaca--------------atatttcttggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |              || ||||||||||    
T  12632807 gatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaaaataggtctgaaaatgatgtttcttggag 12632906  T
Q  101 ggaaattaagcaatttaaattttgttggttaaaagtgaattttgataatttaaaagtgggtgaaaatgatgtttttgatccaacttacta---------- 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||              
T  12632907 ggaaatttagcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatgtttttgatccaacttactaaaaatgatga 12633006  T
Q  191 -aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattgaagcaaa 261  Q
     ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  12633007 taaaatgagattatgaaatatgatgatttattgtaggtggcttagaattttgacacattagattgaagcaaa 12633078  T

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Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 45291439 - 45291699
Alignment:
Q  15 gatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaacaatatttct------tggagggaaatta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||      |||||||||||||    
T  45291439 gatgggttagagggttgggctgagcataagttgggcctcatttcaaattggattttgtttgtttctgaaaa--ataggtctgaattttggagggaaatta 45291536  T
Q  109 agcaatttaaattttgttggttaaaagtgaattttgataatttaaaagtgggtgaaaatgatgtttttgatccaacttacta-----------aaaatga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||           |||||||    
T  45291537 agcaatttaaattttgttggttaaaagtgaattttgataatttaaaaatgggtgaaaatgatatttttgatccaacttactaaaaatgatgataaaatga 45291636  T
Q  198 gattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattgaagcaa 260  Q
    ||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||||||    
T  45291637 gattataaaatatgatgatatattatagatggcttagaattttgacacattggattgaagcaa 45291699  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 25571984 - 25571921
Alignment:
Q  191 aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattg 254  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  25571984 aaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattg 25571921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 26006452 - 26006389
Alignment:
Q  191 aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattg 254  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26006452 aaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattg 26006389  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 26125217 - 26125154
Alignment:
Q  191 aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattg 254  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26125217 aaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattg 26125154  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 45047811 - 45047748
Alignment:
Q  191 aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattg 254  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  45047811 aaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattagattg 45047748  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 23363037 - 23362974
Alignment:
Q  191 aaaatgagattataaaatatgatgatttattgtaagtggcttagaattttgacacattggattg 254  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  23363037 aaaatgagattataaaaaatgatgatttattgtaggaggcttagaattttgacacattggattg 23362974  T

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