View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11215_high_3 (Length: 634)
Name: NF11215_high_3
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11215_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 117 - 622
Target Start/End: Complemental strand, 43657910 - 43657404
Alignment:
| Q |
117 |
ccatgtatgctagctacagagaaccagtatcttcctttgagaaaatcagcatcaatactatgccattgattgcgagatatatgaagtgcatgtattatgt |
216 |
Q |
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| T |
43657910 |
ccatgtatgctagctacagagaaccggtactttcctttgagaaaatcggcatggatattatgccattgattgcgagatatatgaagtgcatgtattatgt |
43657811 |
T |
|
| Q |
217 |
taacatcactgtatgagcaggcaggattgtgagtgaaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttctttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43657810 |
taacatcactgtatgagcaggcaggattgtgagtgcaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttctttt |
43657711 |
T |
|
| Q |
317 |
gaaggactttagcaatggtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaag |
416 |
Q |
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| T |
43657710 |
gaaggactttagcaatggtaatcaaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaag |
43657611 |
T |
|
| Q |
417 |
aatatcattgggaagaagaaaaatttcggactttacttcaacggatttctttgtgttttgttgtctattccaaaacctctccttcaccccaaagccacat |
516 |
Q |
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| T |
43657610 |
aataccatcgggaagaagaaagatttcggactttacttcaatggatttctctgtgttttgttgtctattccaaaacctctccttcaccccaaagccacat |
43657511 |
T |
|
| Q |
517 |
gagaagaagcgaccaacagaggtttcttctacttcatctttggggctacaaacaaaagcactt-cttcccaacttcttcccatctcttctgacgctttaa |
615 |
Q |
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| T |
43657510 |
gagaagaagcgacctacagaggtttcttctacttcatctttggggctacaaacaaaagcacttgatgaccaacttcttcccatctcttctgacgctttaa |
43657411 |
T |
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| Q |
616 |
ctattct |
622 |
Q |
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| T |
43657410 |
ctattct |
43657404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 43657983 - 43657938
Alignment:
| Q |
23 |
tgtgataggattaaaaaacatcacctctttgtgtgtgataccgctg |
68 |
Q |
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| T |
43657983 |
tgtgatagaattaaaaaacatcacctctttgtgtgtgatacagctg |
43657938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 332 - 472
Target Start/End: Complemental strand, 10367479 - 10367339
Alignment:
| Q |
332 |
tggtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcattgggaag |
431 |
Q |
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| T |
10367479 |
tggtaaggaaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaag |
10367380 |
T |
|
| Q |
432 |
aagaaaaatttcggactttacttcaacggatttctttgtgt |
472 |
Q |
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| T |
10367379 |
aagaaagagtccagactctacttcaacgcattcctttgtgt |
10367339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 458
Target Start/End: Complemental strand, 10379002 - 10378878
Alignment:
| Q |
334 |
gtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcattgggaagaa |
433 |
Q |
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||||| ||||||||||| || ||||| |||||||| |||| | ||||||||| ||||||| || || |||||||| ||||||||| |||| ||||||| |
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| T |
10379002 |
gtaaggaaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaa |
10378903 |
T |
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| Q |
434 |
gaaaaatttcggactttacttcaac |
458 |
Q |
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|||| |||||||||| ||||||||| |
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| T |
10378902 |
gaaagatttcggactgtacttcaac |
10378878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 10379227 - 10379137
Alignment:
| Q |
95 |
tcctccaacaatgaagattccgccatgtatgctagctacagagaaccagtatcttcctttgagaaaatcagcatcaatactatgccattga |
185 |
Q |
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| T |
10379227 |
tcctccaacaatgattattccatcatttatgctagcaacagagaacatggaccttcctttgagaatgtcagcatctatactatgccattga |
10379137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 10371120 - 10371031
Alignment:
| Q |
334 |
gtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcat |
424 |
Q |
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| T |
10371120 |
gtaattaaggaactccattatttgaacacgagcctagcattctaggaacttttgagtggaa-accacccaaacacatttgaagaatatcat |
10371031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 10367314 - 10367262
Alignment:
| Q |
461 |
atttctttgtgttttgttgtctattccaaaacctctccttcaccccaaagcca |
513 |
Q |
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| T |
10367314 |
atttctttgggttgtgttgcctcttccaaaaccactccttcaccccgaagcca |
10367262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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