View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11215_low_1 (Length: 1034)
Name: NF11215_low_1
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11215_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 965; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 965; E-Value: 0
Query Start/End: Original strand, 10 - 1018
Target Start/End: Original strand, 41812301 - 41813309
Alignment:
| Q |
10 |
gcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagaga |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812301 |
gcaaaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagaga |
41812400 |
T |
|
| Q |
110 |
aagaggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcgccgcgagtgtaatgtctatctcaa |
209 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41812401 |
aagaggaaggaatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaa |
41812500 |
T |
|
| Q |
210 |
gggaatcatctcaaagactcaaaggggccagagaggagcttaaatcctttcatatattttttatgcaaattttcccagttaggtatagtcgtgattcagc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812501 |
gggaatcatctcaaagactcaaaggggccagagagaagcttaaatcctttcatatattttttatgcaaattttcccagttaggtatagtcgtgattcagc |
41812600 |
T |
|
| Q |
310 |
atataatcagctcattttttctttctgtgaattgattcttttgttttaaaaacactggtatgtgtgtataatttgatttttcctgtatcatgagcagagt |
409 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
41812601 |
atataatcagctcattttttctctctgtgaattgattcttttgttttaaaaacactggtatgtgtgtataatttgatttttccagtatcgtgagcagagt |
41812700 |
T |
|
| Q |
410 |
tagttctgttcttctcttgaaatttggataagtgagctagtataattcaatttttccagtatcatagtgacaagtggggtctttatgttttgctcagtat |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41812701 |
tagttctgttcttctcttgaaatttggataagtgagctagtataattcgatttttccagtatcatagtgacaagtggggtctttatgttttgctcagtat |
41812800 |
T |
|
| Q |
510 |
agaaattttttgttccatgtaacttattaagcagactggcattatggtcttaaacaaatattccctccatatcgctataacttacaagcgtctcatttga |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
41812801 |
agaaattttttgttccatgtaacttattaagcagactggcattatggtcttaaacaaatattccctccatatcgctataacttataagcgtctcatttga |
41812900 |
T |
|
| Q |
610 |
gttgtgtacagttcgtaagaaaataattagttgtattgattttgatgataaaattatttttcattcgccagtggactagttaggtgggtttagagcactg |
709 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41812901 |
gttgtgtacagttcgtaagaaaacaattagttgtattgattttgatgataaaattatttttcattcgccagtggactagttaggtggatttagagcactg |
41813000 |
T |
|
| Q |
710 |
catctccattagagtgaacatattctgttacaaactaggacttgataagattaacccaaaaaatgtttgggcctggccgaaagggtcgctcttgctctgc |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41813001 |
catctccattagagtgaacatattctgttacaaactaggacttgataagattaacccaaaaaatgtttgggcctggccgaaagggtcgctcttgctctgc |
41813100 |
T |
|
| Q |
810 |
ttgatcgacctatccacttatcaataactacgaaccatactcagcaatagagcaatcccaaaagcagattctgaatgttctaatttagccgaaagtttaa |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41813101 |
ttgatcgacctatccacttatcaataactacgaaccatactcagcaatagagcaatcccaaaagcagattctgaatgttctaatttagccgaaagtttaa |
41813200 |
T |
|
| Q |
910 |
tattgaccctaaaaagtttaaaccagcaccaaattagcgtactcagatattgaccaaatacttaacaatctagcatgttgtagatcttatttggctgtaa |
1009 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813201 |
tattgaccctaaaaagtttaaaccagcaccaaattagcgtactcagatattgaccaaatacttaacaatctagcatgttgtagatcttatttggctgtaa |
41813300 |
T |
|
| Q |
1010 |
gaaatggtt |
1018 |
Q |
| |
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||||||||| |
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|
| T |
41813301 |
gaaatggtt |
41813309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 41799088 - 41799511
Alignment:
| Q |
13 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| |||||||||| |
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|
| T |
41799088 |
aaggcaagaaaggaggaatcagagaagatgaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaag |
41799187 |
T |
|
| Q |
113 |
aggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcgccgcgagtgtaatgtctatctcaaggg |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| || | |||||||| |
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|
| T |
41799188 |
aggaaggcatattggatttgggagaggaaaagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaagga |
41799287 |
T |
|
| Q |
213 |
aatcatctcaaagactcaaaggggccagagaggagcttaaatcctttcatata-ttttttatgcaaattttcccagttaggtatagtcgtgattcagcat |
311 |
Q |
| |
|
|||||| |||||||| | ||||||||||||| ||| ||| ||||| |||| |||||||| ||| ||| ||||||||||| || |||||| || |
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|
| T |
41799288 |
aatcatatcaaagacacgcaggggccagagagcagcataagtccttctgtatatttttttattcaactttgtccagttaggtaatgttgtgatttgatat |
41799387 |
T |
|
| Q |
312 |
ataatcagctcattttttctttctgtgaattgattc-------ttttgttttaaaaacactggtatgtgtgtataatttg--atttttcctgtatcatga |
402 |
Q |
| |
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|||| ||||||| ||| ||||||||||||||||| |||||||||| ||||| | ||||||||||||||| ||||| || |||||||| |
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|
| T |
41799388 |
ataaatagctcatattt--tttctgtgaattgattcttttgttttttgttttacaaaca--tgagtgtgtgtataatttgatattttccccatatcatga |
41799483 |
T |
|
| Q |
403 |
gcagagttagttctgttcttctcttgaa |
430 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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| T |
41799484 |
gcagagttagtcctgttcttctcttgaa |
41799511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 41805470 - 41805766
Alignment:
| Q |
10 |
gcaaaggcaagaaaggaggaa-tcagagaagatgaatgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagag |
108 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||| |||||||||| ||||| |
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|
| T |
41805470 |
gcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagag |
41805569 |
T |
|
| Q |
109 |
aaagaggaaggcatgttggatttgggagaggaaaagagggaggccatcaggcagctctgtttgttgattgattatcgccgcgagtgtaatgtctatctca |
208 |
Q |
| |
|
|||||||| || |||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | | ||| | |||| |||||| | |
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|
| T |
41805570 |
aaagaggagggtatgttgaacttgggagaggaaaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaa |
41805669 |
T |
|
| Q |
209 |
agggaatcatctcaaagactcaaaggggccagagaggagcttaaatcctttcatatattttttatgcaaattttcccagttaggtatagtcgtgatt |
305 |
Q |
| |
|
||| | |||| |||||||||| |||||||||||| || | || || | |||| |||||||||||| ||| ||| ||||||| ||||||||| |
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|
| T |
41805670 |
aggaattcatatcaaagactcgccggggccagagagcagtgtgaacccatctatattttttttatgcaactttgtccaattaggtactgtcgtgatt |
41805766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 603 - 663
Target Start/End: Original strand, 978841 - 978901
Alignment:
| Q |
603 |
catttgagttgtgtacagttcgtaagaaaataattagttgtattgattttgatgataaaat |
663 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||| ||||||||| ||||||| |||||||||| |
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|
| T |
978841 |
catttgagttgtttacaattcttaagaaaatgattagttgtgttgatttcaatgataaaat |
978901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 629 - 674
Target Start/End: Original strand, 31665730 - 31665775
Alignment:
| Q |
629 |
aaaataattagttgtattgattttgatgataaaattatttttcatt |
674 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||| |||||||| |
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|
| T |
31665730 |
aaaataattagttgtgttgattttaatggtaaaattaattttcatt |
31665775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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