View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11215_low_2 (Length: 656)

Name: NF11215_low_2
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11215_low_2
NF11215_low_2
[»] chr1 (3 HSPs)
chr1 (366-645)||(6354205-6354491)
chr1 (95-303)||(6354573-6354784)
chr1 (19-59)||(6354794-6354834)
[»] chr2 (2 HSPs)
chr2 (548-605)||(3278204-3278261)
chr2 (547-602)||(28770613-28770668)
[»] chr4 (1 HSPs)
chr4 (558-605)||(37782077-37782124)
[»] chr8 (1 HSPs)
chr8 (547-589)||(31513184-31513227)
[»] chr5 (1 HSPs)
chr5 (547-585)||(30900069-30900108)
[»] scaffold0016 (1 HSPs)
scaffold0016 (548-603)||(102332-102387)
[»] chr6 (1 HSPs)
chr6 (558-602)||(33721398-33721441)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 366 - 645
Target Start/End: Complemental strand, 6354491 - 6354205
Alignment:
Q  366 cccgaaatcaatgcaaagattctagtaacagatttaagacaccataaattctctcaattcccttcacaaatnnnnnnngtatcatccgcaaatcgtaaaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  6354491 cccgaaatcaatgcaaagattctagtaacagatttaagacaccataaattctctcaattcccttcacaaataaaaaaagtatcatccgcaaatcgtaaaa 6354392  T
Q  466 taggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtcaat------atccttcctcta 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  6354391 taggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtcaatcctttgatccttcctcta 6354292  T
Q  560 atgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttg 645  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354291 atgagatctcactacccaaagtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttg 6354205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 95 - 303
Target Start/End: Complemental strand, 6354784 - 6354573
Alignment:
Q  95 accacttcttcaatagactcaacaccatcattgaaaattctgagttaatcaaagtcagactctctctaattgacaattgtctacttttccaacaagtaga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354784 accacttcttcaatagactcaacaccatcattgaaaattctgagttaatcaaagtcagactctctctaattgacaattgtctacttttccaacaagtaga 6354685  T
Q  195 caacattttcatcaacgacgacacaataggcttccaagtatcaactctccttagattggcacccatcaaaatacc---caacttaataggaaattgatca 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  6354684 caacattttcatcaacgacgacacaataggcttccaagtatcaactctccttagattggcacccatcaaaataccgaacaacttaataggaaaatgatca 6354585  T
Q  292 atataacaatgt 303  Q
    ||||||||||||    
T  6354584 atataacaatgt 6354573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6354834 - 6354794
Alignment:
Q  19 agaacatacagggagagacagatggaacctgtacatagtcc 59  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  6354834 agaacatacagggagaggcagatggaacttgtacatagtcc 6354794  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 605
Target Start/End: Original strand, 3278204 - 3278261
Alignment:
Q  548 atccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 605  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaa-tgttttccaacccaa 3278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 602
Target Start/End: Complemental strand, 28770668 - 28770613
Alignment:
Q  547 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacc 602  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  28770668 tatccttcagctaatgagatctcactacccaaggtgtttacaaa-tgttttccaacc 28770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 605
Target Start/End: Original strand, 37782077 - 37782124
Alignment:
Q  558 taatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 605  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  37782077 taatgaaatctcactacccaaggtgtttacaaa-tgttttccaacccaa 37782124  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 589
Target Start/End: Complemental strand, 31513227 - 31513184
Alignment:
Q  547 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaa 589  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  31513227 tatccttcctctaatgaaatctcactattcaaggtgtttacaaa 31513184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 585
Target Start/End: Original strand, 30900069 - 30900108
Alignment:
Q  547 tatccttcctctaatgaaatctcacta-ccaaggtgttta 585  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30900069 tatccttcctctaatgaaatctcactacccaaggtgttta 30900108  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 603
Target Start/End: Complemental strand, 102387 - 102332
Alignment:
Q  548 atccttcctctaatgaaatctcac-taccaaggtgtttacaaagtgttttccaaccc 603  Q
    |||||||||||||| |||||| || ||||||||||||| |||| |||||||||||||    
T  102387 atccttcctctaataaaatcttacttaccaaggtgttttcaaa-tgttttccaaccc 102332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 33721441 - 33721398
Alignment:
Q  558 taatgaaatctcactaccaaggtgtttacaaagtgttttccaacc 602  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  33721441 taatgaaatctcactacaaaggtgtttacaaa-tgtttcccaacc 33721398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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