View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11215_low_4 (Length: 617)

Name: NF11215_low_4
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11215_low_4
NF11215_low_4
[»] chr1 (2 HSPs)
chr1 (327-606)||(6354205-6354491)
chr1 (56-264)||(6354573-6354784)
[»] chr2 (2 HSPs)
chr2 (509-566)||(3278204-3278261)
chr2 (508-563)||(28770613-28770668)
[»] chr4 (1 HSPs)
chr4 (519-566)||(37782077-37782124)
[»] chr8 (1 HSPs)
chr8 (508-550)||(31513184-31513227)
[»] chr5 (1 HSPs)
chr5 (508-546)||(30900069-30900108)
[»] scaffold0016 (1 HSPs)
scaffold0016 (509-564)||(102332-102387)
[»] chr6 (1 HSPs)
chr6 (519-563)||(33721398-33721441)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 327 - 606
Target Start/End: Complemental strand, 6354491 - 6354205
Alignment:
Q  327 cccgaaatcaatgcaaagattctagtaacagatttaagacaccataaattctctcaattcccttcacaaatnnnnnnngtatcatccgcaaatcgtaaaa 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  6354491 cccgaaatcaatgcaaagattctagtaacagatttaagacaccataaattctctcaattcccttcacaaataaaaaaagtatcatccgcaaatcgtaaaa 6354392  T
Q  427 taggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtcaat------atccttcctcta 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  6354391 taggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtcaatcctttgatccttcctcta 6354292  T
Q  521 atgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttg 606  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354291 atgagatctcactacccaaagtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttg 6354205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 56 - 264
Target Start/End: Complemental strand, 6354784 - 6354573
Alignment:
Q  56 accacttcttcaatagactcaacaccatcattgaaaattctgagttaatcaaagtcagactctctctaattgacaattgtctacttttccaacaagtaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354784 accacttcttcaatagactcaacaccatcattgaaaattctgagttaatcaaagtcagactctctctaattgacaattgtctacttttccaacaagtaga 6354685  T
Q  156 caacattttcatcaacgacgacacaataggcttccaagtatcaactctccttagattggcacccatcaaaatacc---caacttaataggaaattgatca 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  6354684 caacattttcatcaacgacgacacaataggcttccaagtatcaactctccttagattggcacccatcaaaataccgaacaacttaataggaaaatgatca 6354585  T
Q  253 atataacaatgt 264  Q
    ||||||||||||    
T  6354584 atataacaatgt 6354573  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 3278204 - 3278261
Alignment:
Q  509 atccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 566  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaa-tgttttccaacccaa 3278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 28770668 - 28770613
Alignment:
Q  508 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacc 563  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  28770668 tatccttcagctaatgagatctcactacccaaggtgtttacaaa-tgttttccaacc 28770613  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 566
Target Start/End: Original strand, 37782077 - 37782124
Alignment:
Q  519 taatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 566  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  37782077 taatgaaatctcactacccaaggtgtttacaaa-tgttttccaacccaa 37782124  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 550
Target Start/End: Complemental strand, 31513227 - 31513184
Alignment:
Q  508 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaa 550  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  31513227 tatccttcctctaatgaaatctcactattcaaggtgtttacaaa 31513184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 546
Target Start/End: Original strand, 30900069 - 30900108
Alignment:
Q  508 tatccttcctctaatgaaatctcacta-ccaaggtgttta 546  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30900069 tatccttcctctaatgaaatctcactacccaaggtgttta 30900108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 564
Target Start/End: Complemental strand, 102387 - 102332
Alignment:
Q  509 atccttcctctaatgaaatctcac-taccaaggtgtttacaaagtgttttccaaccc 564  Q
    |||||||||||||| |||||| || ||||||||||||| |||| |||||||||||||    
T  102387 atccttcctctaataaaatcttacttaccaaggtgttttcaaa-tgttttccaaccc 102332  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 563
Target Start/End: Complemental strand, 33721441 - 33721398
Alignment:
Q  519 taatgaaatctcactaccaaggtgtttacaaagtgttttccaacc 563  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  33721441 taatgaaatctcactacaaaggtgtttacaaa-tgtttcccaacc 33721398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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