View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11215_low_5 (Length: 369)
Name: NF11215_low_5
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11215_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 26608107 - 26608441
Alignment:
| Q |
18 |
attatgtaagacccattttcaaaatgtatgactcacattaattttatccaataaaagcgtaagtattnnnnnnnntgttgaaaagatagtgatcataaga |
117 |
Q |
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| T |
26608107 |
attatgtaagacccattttcaaaatatatgactc---------taatccaataaaaacgtaagtattaaaaaaaatgttgaaaagatagtgttcataaga |
26608197 |
T |
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| Q |
118 |
ctcttcttacttaggtaatcattaaaggagttaaggaacacatagttaaaggagagagtttctttcttaagtaatcgattaaagcttt-aaaaaagccac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
26608198 |
ctcttcttacttaggtaatcattaaaggagttaaggaacccatagttaaaggatagagtttctttcttaagtaatcaattaaagctttaaaaaaagccac |
26608297 |
T |
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| Q |
217 |
atttaagagctattgaccgaccacttcactatctttcaagttcgataaagataaaaaataggaaaccatttctaagacatattataannnnnnnnnaagg |
316 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26608298 |
atttaagagctattgaccgatcacttgactatctttcaagttcgataaagataaaaaataggaaaccatttctaagacatattataatttttttttaagg |
26608397 |
T |
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| Q |
317 |
ataattagaaattagaagtccgaaaatccaacaagccttcatct |
360 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26608398 |
ataattagaaattagaagtccgaaaatccaacaagctttcatct |
26608441 |
T |
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