View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11215_low_8 (Length: 274)

Name: NF11215_low_8
Description: NF11215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11215_low_8
NF11215_low_8
[»] chr7 (5 HSPs)
chr7 (116-253)||(6889876-6890013)
chr7 (116-239)||(6844886-6845009)
chr7 (153-254)||(6849470-6849571)
chr7 (155-230)||(30597469-30597544)
chr7 (1-45)||(6890093-6890137)
[»] chr3 (5 HSPs)
chr3 (174-220)||(481774-481820)
chr3 (181-216)||(476839-476874)
chr3 (181-235)||(13490193-13490247)
chr3 (171-220)||(1205136-1205185)
chr3 (171-220)||(1303917-1303966)
[»] chr6 (6 HSPs)
chr6 (174-219)||(7114797-7114842)
chr6 (174-219)||(7119869-7119914)
chr6 (174-219)||(7123273-7123318)
chr6 (174-219)||(7117321-7117366)
chr6 (174-219)||(7129696-7129741)
chr6 (175-219)||(7140000-7140044)
[»] scaffold0525 (1 HSPs)
scaffold0525 (174-219)||(1945-1990)
[»] chr5 (2 HSPs)
chr5 (183-232)||(25070007-25070056)
chr5 (183-232)||(25127982-25128031)
[»] chr4 (1 HSPs)
chr4 (182-226)||(52187624-52187668)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 6890013 - 6889876
Alignment:
Q  116 gaatcaactaatacttcctcaaatcaaacttcgacggaagtacctctagagcattatgattgattgtcaatgatttgatattagcaagttcaaccagcca 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6890013 gaatcaactaatacttcctcaaatcaaacttcgacgaaagtacctctagagcattatgattgattgtcaatgatttgatattagcaagttcaaccagcca 6889914  T
Q  216 gttgagaagaaccaaagaaatatctgcatcaatagacc 253  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6889913 gttgagaagaaccaaagaaatatctacatcaatagacc 6889876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 6845009 - 6844886
Alignment:
Q  116 gaatcaactaatacttcctcaaatcaaacttcgacggaagtacctctagagcattatgattgattgtcaatgatttgatattagcaagttcaaccagcca 215  Q
    |||| |||||||||| ||||||||||||||| | || ||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  6845009 gaattaactaatactccctcaaatcaaacttggccgaaagtacctctagagcattatggttgatagtcaatgatttgatattggcaagttcaaccagcca 6844910  T
Q  216 gttgagaagaaccaaagaaatatc 239  Q
    |||||||||| |||||||| ||||    
T  6844909 gttgagaagagccaaagaagtatc 6844886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 6849571 - 6849470
Alignment:
Q  153 aagtacctctagagcattatgattgattgtcaatgatttgatattagcaagttcaaccagccagttgagaagaaccaaagaaatatctgcatcaatagac 252  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||| | |||| ||||||||||||    
T  6849571 aagtacctctagagaagtatcattgattgtcaatgatttgacattagtaagttcagccagccagttgagaagaacaaaaggagtatccgcatcaatagac 6849472  T
Q  253 cc 254  Q
    ||    
T  6849471 cc 6849470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 30597469 - 30597544
Alignment:
Q  155 gtacctctagagcattatgattgattgtcaatgatttgatattagcaagttcaaccagccagttgagaagaaccaa 230  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| | | ||||||||||||||||||    
T  30597469 gtacctttagagcagtatgattgagtgtcaatgatttgatattagcaagctcagctaaccagttgagaagaaccaa 30597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6890137 - 6890093
Alignment:
Q  1 caagaatgattgtgaatcaggatcaattaaatgcaagttgtattt 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  6890137 caagaatgattgtgaatcaggatcaatttaatgcaagttgtattt 6890093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 481820 - 481774
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttga 220  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||    
T  481820 attgatggtcaatgattcgatattagcaagttcaaccagccagttga 481774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 476874 - 476839
Alignment:
Q  181 gtcaatgatttgatattagcaagttcaaccagccag 216  Q
    |||||||||| |||||||||||||||||||||||||    
T  476874 gtcaatgattcgatattagcaagttcaaccagccag 476839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 13490193 - 13490247
Alignment:
Q  181 gtcaatgatttgatattagcaagttcaaccagccagttgagaagaaccaaagaaa 235  Q
    ||||||||||  ||||||||||| ||||| ||||||||||| |||||||| ||||    
T  13490193 gtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaatgaaa 13490247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 1205185 - 1205136
Alignment:
Q  171 atgattgattgtcaatgatttgatattagcaagttcaaccagccagttga 220  Q
    |||| |||| |||||||||| |||||||||||| ||||||||| ||||||    
T  1205185 atgagtgatggtcaatgattcgatattagcaagctcaaccagcaagttga 1205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 1303917 - 1303966
Alignment:
Q  171 atgattgattgtcaatgatttgatattagcaagttcaaccagccagttga 220  Q
    |||| |||| |||||||||| |||||||||||| ||||||||| ||||||    
T  1303917 atgagtgatggtcaatgattcgatattagcaagctcaaccagcaagttga 1303966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7114797 - 7114842
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  7114797 attgattgtcaatgattcgatattagcaagctcaaccagccagttg 7114842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7119869 - 7119914
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  7119869 attgattgtcaatgattcgatattagcaagctcaaccagccagttg 7119914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7123273 - 7123318
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  7123273 attgattgtcaatgattcgatattagcaagctcaaccagccagttg 7123318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7117321 - 7117366
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  7117321 attgattgtcaatgattcgatataagcaagctcaaccagccagttg 7117366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7129696 - 7129741
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  7129696 attgattgtcaatgattcgatataagcaagctcaaccagccagttg 7129741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 7140000 - 7140044
Alignment:
Q  175 ttgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||    
T  7140000 ttgattgtcaatgattcgatattagcaagctcaaccaaccagttg 7140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 1945 - 1990
Alignment:
Q  174 attgattgtcaatgatttgatattagcaagttcaaccagccagttg 219  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||||    
T  1945 attgattgtcaatgattcgatattagcaagctcaaccaaccagttg 1990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 25070056 - 25070007
Alignment:
Q  183 caatgatttgatattagcaagttcaaccagccagttgagaagaaccaaag 232  Q
    ||||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  25070056 caatgatttgatattagcaatctcaaccagccagttgagtagaagcaaag 25070007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 25128031 - 25127982
Alignment:
Q  183 caatgatttgatattagcaagttcaaccagccagttgagaagaaccaaag 232  Q
    ||||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  25128031 caatgatttgatattagcaatctcaaccagccagttgagtagaagcaaag 25127982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 52187668 - 52187624
Alignment:
Q  182 tcaatgatttgatattagcaagttcaaccagccagttgagaagaa 226  Q
    ||||||||| |||||||||||| ||||||||||| ||||| ||||    
T  52187668 tcaatgattcgatattagcaagctcaaccagccaattgagtagaa 52187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University