View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11216_low_1 (Length: 389)
Name: NF11216_low_1
Description: NF11216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11216_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 48879283 - 48879013
Alignment:
| Q |
17 |
aataataaccattctcttgttctgtgacttgatgtttctttagtttgaaattgatttcatttcctttgtgtgtgcaacagagtaaagataatccatttgg |
116 |
Q |
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| T |
48879283 |
aataataaccattctcttgttctgtgacttgatgtttctttagtttgaacttgatttcatttcctttgtgtgtgcaacagagtaaagataatccttttgg |
48879184 |
T |
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| Q |
117 |
agttaaagctttgaaaaggacacctgcaataagtactgggaattggactgcacgaaaagccgcaataaaacgcgcaataaaaggcaactaagtctaagtg |
216 |
Q |
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| T |
48879183 |
agttaaagctttgaaaaggacacctgcaataagtactgggaattggactgcacgaaaagccgcaataaaacgcgcaataaaaggcaa------ctaaatg |
48879090 |
T |
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| Q |
217 |
tgacagaagagagtggaatactcatggctggcttaagcacaacaagtcaaaaacaatctattatgtaaatataacat |
293 |
Q |
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| T |
48879089 |
tgacagaagagagtggaatactcatggctggcttaagcacaacaagtcaaaaacagtctattatgtaaatataacat |
48879013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 48868950 - 48868877
Alignment:
| Q |
57 |
tagtttgaaattgatttcatttcctttgtgtgtgcaacagagtaaagataatccatttggagttaaagctttga |
130 |
Q |
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| T |
48868950 |
tagtttgaagttggtttcattttctttgtgtgtgcaacagagtaaagacagtccatttggagtaaaagctttga |
48868877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 32718286 - 32718211
Alignment:
| Q |
51 |
tttctttagtttgaaattgatttcatttcctttgtgtgtgcaacagagtaaagataatccatttggagttaaagcttt |
128 |
Q |
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| T |
32718286 |
tttctttattttgaagttgatttcattttct--gtttgtgcaacagagtaaagacaattcatttggagtggaagcttt |
32718211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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