View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_14 (Length: 440)
Name: NF11217_high_14
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 229356 - 229040
Alignment:
| Q |
10 |
gcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaac |
109 |
Q |
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| T |
229356 |
gcagagaagttgtggtcacataagatggttggattagtatttggatgtgctttcctgtccttgctgttctagatcgatacctctgtcttctcttcagaac |
229257 |
T |
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| Q |
110 |
tcagattgttatttttacctctatatattattattattttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcatt |
209 |
Q |
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| T |
229256 |
tcagattgttatttttacctctatatattattatt---ttctcgatgtgatatgggagtttattactacatacattgtttgcattcttgagacattcatt |
229160 |
T |
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| Q |
210 |
tcaggggaggttttgtattaattgaggacacttattttgtatctcactattactattatagtttatccatcattcgttgttttctttgaatattttattg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
229159 |
tcaggggaggttttgtattaattgaggacacttattttgtatctcactattactattatagtttatccatcattcgttgctttctttgaatattttattg |
229060 |
T |
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| Q |
310 |
attacatttttctgttaatt |
329 |
Q |
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||||||||||||||| |||| |
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| T |
229059 |
attacatttttctgtaaatt |
229040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 228706 - 228633
Alignment:
| Q |
353 |
aatgtttctatttctatttacattcacgtagttctgtaacttagggagactctacaacaggaaccattagattt |
426 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
228706 |
aatgtttctatttctatttacatttacgtagttctgtaacgtagggagactctacaacaggaaccattagattt |
228633 |
T |
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