View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_15 (Length: 421)
Name: NF11217_high_15
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_15 |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 9831120 - 9830784
Alignment:
| Q |
16 |
agataaacggattgaccatttgggatgttaaagaacgaatgcaaaacaacaaaattataattgaaaagttatgtggtcaaatttaatatgaacattcttt |
115 |
Q |
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| T |
9831120 |
agataaacggattgaccatttgggatgttaaagaacgaatgcaaaacaacaaaattataattgaaaagttatgtggtcaaatttaatatgaacattcttt |
9831021 |
T |
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| Q |
116 |
tattacttttatcttgcaatatggaaaacgaacaatcatgagtgtatttttcctaaaacctgagaatgaatttacgaaatattgtttatatcttcttcgt |
215 |
Q |
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| T |
9831020 |
tattacttttatcttgcaatatgaaaaacgaacaatcatgagtgtatttttcctaaaacctgagaatgaatttacgaaatattgtttatatcttcttcgt |
9830921 |
T |
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| Q |
216 |
agttatttattaaagtaataaaaataattatgttta--------aataataggtaaagtgaatcatagtatcaagttttactttagaaaatattattttt |
307 |
Q |
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| T |
9830920 |
agttatttattaaagtaataaaaataattatgtttatccacttgaataataggtaaagtgaatcatagtatcaagttttactttagaaaatattattttt |
9830821 |
T |
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| Q |
308 |
aatttgataagttgaacaatatggggtggtaaagtgg |
344 |
Q |
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| T |
9830820 |
aatttgataagttgaacaatatggggtggtaaagtgg |
9830784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 28116260 - 28116368
Alignment:
| Q |
140 |
aaaacgaacaatcatgagtgtatttttcctaaaacctgagaatgaatttacgaaatattgtttatatcttcttcgtagttatttattaaagtaataaaaa |
239 |
Q |
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| T |
28116260 |
aaaaagaacaagcacgagtgtgtttctgctaaaacctaagcatgaatttacaaaatattgtttatatcttcttagtagtttgttattaatgtaatgaaaa |
28116359 |
T |
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| Q |
240 |
taattatgt |
248 |
Q |
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| T |
28116360 |
taattatgt |
28116368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 28200055 - 28200163
Alignment:
| Q |
140 |
aaaacgaacaatcatgagtgtatttttcctaaaacctgagaatgaatttacgaaatattgtttatatcttcttcgtagttatttattaaagtaataaaaa |
239 |
Q |
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| T |
28200055 |
aaaaagaaaaatcatgagtgcgtttatgctaaaacctaagcatgaatatac--aatattgtttatatcttctttgtagttttttattaatgtaatgaaaa |
28200152 |
T |
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| Q |
240 |
taattatgttt |
250 |
Q |
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| T |
28200153 |
taattatgttt |
28200163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 553 - 661
Alignment:
| Q |
140 |
aaaacgaacaatcatgagtgtatttttcctaaaacctgagaatgaatttacgaaatattgtttatatcttcttcgtagttatttattaaagtaataaaaa |
239 |
Q |
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|||| ||| ||||||||||| ||| | ||||||||| || |||||| ||| |||||||||||||||||||| |||||| |||||||| ||||| |||| |
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| T |
553 |
aaaaagaaaaatcatgagtgcgtttatgctaaaacctaagcatgaatatac--aatattgtttatatcttctttgtagttttttattaatgtaatgaaaa |
650 |
T |
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| Q |
240 |
taattatgttt |
250 |
Q |
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||||||||||| |
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| T |
651 |
taattatgttt |
661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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