View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11217_high_17 (Length: 390)
Name: NF11217_high_17
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 10289807 - 10290155
Alignment:
| Q |
16 |
aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289807 |
aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc |
10289906 |
T |
|
| Q |
116 |
tgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10289907 |
tgatgtctttgaaaactttgtggcacaacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtct |
10290006 |
T |
|
| Q |
216 |
tcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290007 |
tcatgaacactgctgcacacatatgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca |
10290106 |
T |
|
| Q |
316 |
cctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290107 |
cctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta |
10290155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 9747700 - 9747370
Alignment:
| Q |
16 |
aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc |
115 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| | |
|
|
| T |
9747700 |
aataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagc |
9747602 |
T |
|
| Q |
116 |
tgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtct |
215 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||| | ||||| |||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9747601 |
tgatgtctcggaaaactt-gtggcacagcagtatcatctcttgaggacaaatcaggagtt-gatattggacttaaatattcggttcgcctccaaaagtct |
9747504 |
T |
|
| Q |
216 |
tcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca |
315 |
Q |
| |
|
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
9747503 |
tcatggacactgctgcacacagatgcaggactaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa-- |
9747406 |
T |
|
| Q |
316 |
cctctgtatgaaatataaaggtcatcatggtcaacag |
352 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
9747405 |
-ctctgaatgaaatataaaggtcgtcatgggcaacag |
9747370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 81 - 361
Target Start/End: Original strand, 10298010 - 10298270
Alignment:
| Q |
81 |
acttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgata |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||| ||||| || |
|
|
| T |
10298010 |
acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaactt-gtggcacaacagtatcgtctcttgatgacaaat------------- |
10298095 |
T |
|
| Q |
181 |
ttggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagc |
280 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10298096 |
-tggatttaaacattcgattcgcctccagaagtcttcatgaacactgctgcacacat--gctggactaggaggtacctcagtgtagttctccaaaagagc |
10298192 |
T |
|
| Q |
281 |
atgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaata |
361 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| | ||| |||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
10298193 |
atatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaaggtcatcatagtcaacaggtaaaaata |
10298270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 10297960 - 10298005
Alignment:
| Q |
16 |
aataaaacaacattaaccacctttttcttgaatcaaaactatggtat |
62 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
10297960 |
aataaaacaacattaaccgccttttt-ttgtatcaaaactatggtat |
10298005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 40 - 352
Target Start/End: Original strand, 34694209 - 34694519
Alignment:
| Q |
40 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
139 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34694306 |
T |
|
| Q |
140 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
236 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34694307 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34694403 |
T |
|
| Q |
237 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
335 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
|
|
| T |
34694404 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34694502 |
T |
|
| Q |
336 |
gtcatcatggtcaacag |
352 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34694503 |
gtcatcatggtcaacag |
34694519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 40 - 352
Target Start/End: Original strand, 34716621 - 34716931
Alignment:
| Q |
40 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc |
139 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc |
34716718 |
T |
|
| Q |
140 |
acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- |
236 |
Q |
| |
|
||| ||||||| | || | |||| ||| |||||| ||||||||| |||||||||| || ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
34716719 |
acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat |
34716815 |
T |
|
| Q |
237 |
-tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag |
335 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||| |
|
|
| T |
34716816 |
gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag |
34716914 |
T |
|
| Q |
336 |
gtcatcatggtcaacag |
352 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34716915 |
gtcatcatggtcaacag |
34716931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 352
Target Start/End: Complemental strand, 37744192 - 37743885
Alignment:
| Q |
38 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
137 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| |||| ||||| |
|
|
| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaac--ttgtg |
37744095 |
T |
|
| Q |
138 |
gcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacat |
237 |
Q |
| |
|
||||||||||||| | || | ||| ||| |||||| |||||| || |||||||||| || ||||| ||||||||||| ||||| ||||||| ||| |
|
|
| T |
37744094 |
gcacaacagtatcatctcggg---acaaatcaggagtt-gatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag |
37743999 |
T |
|
| Q |
238 |
atgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggt |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||| ||||| |
|
|
| T |
37743998 |
atgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggt |
37743900 |
T |
|
| Q |
338 |
catcatggtcaacag |
352 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37743899 |
catcatggtcaacag |
37743885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University