View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11217_high_19 (Length: 326)
Name: NF11217_high_19
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 7737080 - 7736777
Alignment:
| Q |
6 |
aggagcacagacttgcatctgaacgacgagtgggtccaccaatacctaacagaaaagttcaatatgctgatcttcatatagataagcgtacaagagagtc |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
7737080 |
aggagcatagacttgcatctgaacgacgagtgggtccaccaatacctaacagaaaagttcaatatgccgatcttcgtatagaaaagcgtacaagagagtc |
7736981 |
T |
|
| Q |
106 |
accctgtaatgatttatctgctaccaaatctgtacctgttgctgtttcaggtaggatacttttctagttataatggacttttcgaattgtctctgnnnnn |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7736980 |
acccaataatgatttatctgctaccaaatctgtacctgttgctgtttcaggtaggatacttttctagttataatggacttttcgaattgtctctgttttt |
7736881 |
T |
|
| Q |
206 |
nnnctcgtagcatctcaatatatatgtggtaaagcatcttggtatgaattgtgatattgtcatttgagcctgtcagatttgaaccaatcatctctaatct |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7736880 |
tttctcgtaacatctcaatatatatgtggtaaagcatcttggtatgaattgtgatattgtcatttgagcctgtcagatttgaaccaatcatctctaatct |
7736781 |
T |
|
| Q |
306 |
tatt |
309 |
Q |
| |
|
|||| |
|
|
| T |
7736780 |
tatt |
7736777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University