View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_22 (Length: 300)
Name: NF11217_high_22
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 8800793 - 8801073
Alignment:
| Q |
1 |
aaactactatattcaagctgcaagaacattgatcatgttatatcgctatttannnnnnnnnnnnngccacattagagtgatgttgtggaaagttcttgtt |
100 |
Q |
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|||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8800793 |
aaactattatattcaagctgtaagaacattgatcatcatatatcgctatttatttattttttt--gccacattagagtgatgttgtggaaagttcttgtt |
8800890 |
T |
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| Q |
101 |
ccagcttaacannnnnnnnnnnnnncagacgatctaagccctttttaaacaatcactttccacgtttggcttaggcgtactatgcagtttctcaaaagag |
200 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
8800891 |
ccagcttaacatttttttgctttttcagacgatctaaaccctttttaaacaatcactt-ccacgtttggcttaggcgtactgtgcagtttctcaaaagag |
8800989 |
T |
|
| Q |
201 |
gtttaatcaaagtttggtagtgcctataaatggataagatcattaagcaaattgtcaacnnnnnnnnctgaaacttttcaaaag |
284 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8800990 |
gtttaatcaaaatttggtagtgcctataaatggataagatcattaagcaaattgtcaacttttttttctgaaacttttcaaaag |
8801073 |
T |
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