View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_23 (Length: 288)
Name: NF11217_high_23
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 51706575 - 51706793
Alignment:
| Q |
20 |
gttgatagagtgttcatcgaggccacagaagaaatcaactgcacatcacatgaagacgaggcccagaaaatcatcactgtcagataggaatcggaaacca |
119 |
Q |
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| T |
51706575 |
gttgatagagtgttcatcgaggccacagaagaaatcaactgcacatcacatgaagacgagacccagaaaatcatcactgtcggataggaatcggaaacca |
51706674 |
T |
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| Q |
120 |
acagagtatgctccgttgccaccactgcctcctgattttacaattgtcatttctgctgatgcatcttcaacggctactgttgttcctccaccccctactc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
51706675 |
acagagtatgctccgttgccaccactgcctcctgattttacaattgtcattcctgctgatgcatcttcaacggctactgttgttcctccgcctcctactc |
51706774 |
T |
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| Q |
220 |
cttctacttgattcggtac |
238 |
Q |
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||||||||||||||||||| |
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| T |
51706775 |
cttctacttgattcggtac |
51706793 |
T |
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