View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_25 (Length: 278)
Name: NF11217_high_25
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 30761945 - 30761674
Alignment:
| Q |
10 |
gcacagacacaactttaccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaa |
109 |
Q |
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| T |
30761945 |
gcacagacacaactttaccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgagggggttcaagacaatgaaaa |
30761846 |
T |
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| Q |
110 |
tatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatgtgtctaatat-aaatcccgaca |
207 |
Q |
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| T |
30761845 |
tatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaaccccctggccacaacgtggctccgacaatgtgtctaatataaaatcccgaca |
30761746 |
T |
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| Q |
208 |
-nnnnnnngattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttt |
278 |
Q |
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| T |
30761745 |
ttttttttgattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttt |
30761674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 21139196 - 21139019
Alignment:
| Q |
10 |
gcacagacacaactttaccaactttttcctagtgagagaggagagagtcaattcaatatggtgcaaggcttaattttgaaggggttcaagacaatgaaaa |
109 |
Q |
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| T |
21139196 |
gcacagacacaactttgccaactttttcctagtgagagaggagagagtcgatgcaatatggtgcaaggcttaattttgagggggttcaagacaataaaaa |
21139097 |
T |
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| Q |
110 |
tatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaa-cccctggccacaacgtggctccgacaatg |
186 |
Q |
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| T |
21139096 |
catagtaagataggtgtaaatttgaatagttgagaaggtgcagttgaaccccctggccactacatggctccgccaatg |
21139019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 30749528 - 30749465
Alignment:
| Q |
215 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttt |
278 |
Q |
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| T |
30749528 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtatttt |
30749465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 30770979 - 30770916
Alignment:
| Q |
215 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaagcaatgagtgtttt |
278 |
Q |
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| T |
30770979 |
gattaaaataggttatcaatcatggtctctcgttggatgaaatgaaggaaacaatgagtatttt |
30770916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 28444633 - 28444511
Alignment:
| Q |
65 |
atatggtgcaaggcttaattttgaaggggttcaagacaatgaaaatatagtaaaataggtgtaaatatgaaaagttgagaaggtgcaattgaacccctgg |
164 |
Q |
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||||||||||||| || ||||||| ||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
28444633 |
atatggtgcaaggttttattttgagggggttcaaaacactaaaaatatagtaaaataggtgtaaaattgaaaagttgagaaggtggagttgaacccctga |
28444534 |
T |
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| Q |
165 |
ccacaacgtggctccgacaatgt |
187 |
Q |
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| T |
28444533 |
ccactatgtggctccgccaatgt |
28444511 |
T |
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