View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_31 (Length: 239)
Name: NF11217_high_31
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26348093 - 26347877
Alignment:
| Q |
1 |
agggtttgtattggtaaagaaatggctttgatggaacttaaaagtgtggcaatttctttgcttagaaagtttcatattgaattggaaatggaagatagaa |
100 |
Q |
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| T |
26348093 |
agggtttgtattggtaaagaaatggctttgatggaacttaaaagtgtggcaatttctttgcttagaaagtttcatattgaattggaa------gatagaa |
26348000 |
T |
|
| Q |
101 |
caatgtttcatggtaacccaagattctctcctggactaactgccacttttgcttttggtcttcctgtatttgttcgtccaagaggaaccaagtgaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26347999 |
caatgtttcatggtaacccaagattctctcctggactaactgccacttttgcttttggtcttcctgtatttgttcgtccaagaggaaccaagtgaataat |
26347900 |
T |
|
| Q |
201 |
ccgtactactatatatatgtatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
26347899 |
ccgtactactatatatatgtatc |
26347877 |
T |
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