View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_high_37 (Length: 202)
Name: NF11217_high_37
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 44227695 - 44227530
Alignment:
| Q |
15 |
caaaggtagtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattc |
114 |
Q |
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| T |
44227695 |
caaaggtagtatatatacaaacatgttttctcattccatattcattt-ccttttccacaaagaaacatcaatacaacaagtttttttccattcatcattc |
44227597 |
T |
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| Q |
115 |
tttaattctttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataacatt |
186 |
Q |
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| T |
44227596 |
tttcattctttcattatattcta-----cacttcatttagtttattgtttgggttcaattcataataacatt |
44227530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 44215528 - 44215374
Alignment:
| Q |
23 |
gtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattctttaattc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||| |||| |
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| T |
44215528 |
gtataaatacaaacatgttttctcattccatattca-tttcctttgccacaaagaaacatcaatacaacaag-ttttttcctttcatcattctttgattc |
44215431 |
T |
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| Q |
123 |
tttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataaca |
184 |
Q |
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|||| ||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
44215430 |
tttc-----attttattcgacactccatttagtttaatgttttggttcaattcataataaca |
44215374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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