View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_11 (Length: 463)
Name: NF11217_low_11
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Original strand, 29466959 - 29467388
Alignment:
| Q |
17 |
agattcaagaacaatcaaccaatgtaagcatttatatttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaagga |
116 |
Q |
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| T |
29466959 |
agattcaagaacaatcaaccaatgtaagcatttatatttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaagga |
29467058 |
T |
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| Q |
117 |
tactctttttctgtgtcagtatagtaaccggtgtccgtgtccgtgtcagtccttcataatattgattttgttaatgataaatgtactacaggaagggctt |
216 |
Q |
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| T |
29467059 |
tactctttttctgtgtcagtatagtaaccggtgt------ccgtgtcagtcattcataatattgattttgttaatgataaatgtactacaggaagggctt |
29467152 |
T |
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| Q |
217 |
gaaactgagataaaccttggaagccaagctagttggtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgtagagatgttggttact |
316 |
Q |
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| T |
29467153 |
gaaactgagataaaccttggaagccaagctagttggtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgcagagatgttggttact |
29467252 |
T |
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| Q |
317 |
actggctgaggattatgatctatatcattgtatctatatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgc |
416 |
Q |
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| T |
29467253 |
actggctgaggattatgatctatatcattgtatctatatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgc |
29467352 |
T |
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| Q |
417 |
ctgtggtgcatttatatcaggatttatgactttcat |
452 |
Q |
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| T |
29467353 |
ctgtggtgcatttatatcaggatttatgactttcat |
29467388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 29434040 - 29434471
Alignment:
| Q |
19 |
attcaagaacaatcaaccaatgtaagcatttatatttagctatacacttcattacatataattcaactgatatccatgccgagctgaaatcctaaggata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
29434040 |
attcaagaacaatcaaccaatgtaagcatttatatttagctatacacttcattacatataattcaactgatatctatgccgagctgaaatccttaggata |
29434139 |
T |
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| Q |
119 |
ctctttttctgtgtcagtatagtaaccggtgtccgtgtccgtgtcagtccttcataatattgattttgttaatgataaatgtactacaggaagggcttga |
218 |
Q |
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| T |
29434140 |
ttctttttctgtgccagtatcgtatccggtgt------ccgtgtcagtacttcataatcttgatttagttaatgataaatgtattacaggaagggattga |
29434233 |
T |
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| Q |
219 |
aactgagataaaccttggaagccaagctagttggtggaagcaactcaaaacactgacaaggagatcatttgtgaacatgtgtagagatgttggttactac |
318 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29434234 |
aactgagacaaactatggaagccaagctagttggtggaagcaactctctacactgacgaggagatcatttgtgaacatgtgtagagatattggttactac |
29434333 |
T |
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| Q |
319 |
tggctgaggattatgatctatatcattgtatctatatgtgttggaaccatctattttgatgttggctacggctacacttccatcttggctcgtggtgcct |
418 |
Q |
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||| |||| ||||| || | |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
29434334 |
tggttgagaattataattaacatcattgtatctatatgtgttggaactctctattttgatgttggctatagctatacttccatcttggctcgcggtgcct |
29434433 |
T |
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| Q |
419 |
gtggtgcatttatatcaggatttatgactttcatctca |
456 |
Q |
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||||||||||| || |||||||||||||| ||||||| |
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| T |
29434434 |
gtggtgcatttgtaacaggatttatgactaccatctca |
29434471 |
T |
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