View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_13 (Length: 445)

Name: NF11217_low_13
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_13
NF11217_low_13
[»] chr4 (10 HSPs)
chr4 (20-445)||(2671350-2671775)
chr4 (209-445)||(20945859-20946094)
chr4 (209-340)||(11148348-11148479)
chr4 (213-261)||(28426836-28426884)
chr4 (212-258)||(23702398-23702444)
chr4 (209-261)||(2672972-2673024)
chr4 (210-258)||(4906128-4906176)
chr4 (210-258)||(4933343-4933391)
chr4 (210-258)||(29756271-29756319)
chr4 (206-258)||(55019369-55019421)
[»] chr8 (7 HSPs)
chr8 (210-444)||(7274478-7274711)
chr8 (210-258)||(359326-359374)
chr8 (279-331)||(45447074-45447126)
chr8 (212-258)||(21142480-21142526)
chr8 (209-258)||(357975-358024)
chr8 (209-261)||(7272898-7272950)
chr8 (409-445)||(7273108-7273144)
[»] chr3 (15 HSPs)
chr3 (211-438)||(55196574-55196802)
chr3 (207-445)||(1676979-1677216)
chr3 (357-444)||(13645306-13645394)
chr3 (210-261)||(3025822-3025873)
chr3 (207-268)||(39870450-39870511)
chr3 (406-445)||(13645047-13645086)
chr3 (278-340)||(3149329-3149391)
chr3 (404-444)||(34594453-34594493)
chr3 (211-261)||(5377807-5377857)
chr3 (208-262)||(27662665-27662719)
chr3 (213-258)||(24613624-24613669)
chr3 (278-331)||(27661162-27661215)
chr3 (409-445)||(1678588-1678624)
chr3 (409-445)||(5387068-5387104)
chr3 (207-259)||(55198328-55198380)
[»] chr2 (13 HSPs)
chr2 (211-445)||(5696195-5696428)
chr2 (214-336)||(28167264-28167386)
chr2 (211-263)||(16288508-16288560)
chr2 (278-338)||(30545708-30545768)
chr2 (211-258)||(10343988-10344035)
chr2 (211-258)||(22060172-22060219)
chr2 (211-261)||(9262901-9262951)
chr2 (408-445)||(9662037-9662074)
chr2 (282-331)||(16288910-16288959)
chr2 (208-261)||(28165655-28165708)
chr2 (210-258)||(22054333-22054381)
chr2 (210-258)||(43516397-43516445)
chr2 (210-258)||(44820942-44820990)
[»] chr1 (14 HSPs)
chr1 (210-441)||(43882053-43882283)
chr1 (210-331)||(46605861-46605982)
chr1 (278-333)||(33753702-33753757)
chr1 (211-340)||(13222914-13223042)
chr1 (207-258)||(26734422-26734473)
chr1 (210-261)||(43883814-43883865)
chr1 (209-261)||(12097949-12098001)
chr1 (210-258)||(31809988-31810036)
chr1 (211-258)||(8322521-8322568)
chr1 (287-340)||(33755245-33755298)
chr1 (415-444)||(37402445-37402474)
chr1 (210-258)||(8323451-8323499)
chr1 (210-258)||(9627593-9627641)
chr1 (210-258)||(31815782-31815830)
[»] chr7 (7 HSPs)
chr7 (207-340)||(38758247-38758380)
chr7 (362-445)||(5975480-5975563)
chr7 (278-333)||(27161932-27161987)
chr7 (286-340)||(27160380-27160434)
chr7 (209-258)||(41385821-41385870)
chr7 (205-258)||(41591509-41591562)
chr7 (210-258)||(41384148-41384196)
[»] chr5 (4 HSPs)
chr5 (210-340)||(33489829-33489959)
chr5 (278-340)||(35929589-35929651)
chr5 (278-340)||(6535572-6535634)
chr5 (209-258)||(9672363-9672412)
[»] scaffold0129 (1 HSPs)
scaffold0129 (205-258)||(4269-4322)
[»] scaffold0517 (1 HSPs)
scaffold0517 (415-444)||(5602-5631)
[»] scaffold0060 (1 HSPs)
scaffold0060 (209-258)||(13263-13312)
[»] chr6 (3 HSPs)
chr6 (209-258)||(19402134-19402183)
chr6 (210-258)||(843533-843581)
chr6 (210-258)||(11065666-11065714)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 2671350 - 2671775
Alignment:
Q  20 tattttagatcgaatttacaatataaaattcttctactatggagaattggaaaatattataatcaatctataatatcacatagatatattaaaaaatata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2671350 tattttagatcgaatttacaatataaaattcttctactatggagaattggaaaatattataatcaatctataatatcacatagatatattaaaaaatata 2671449  T
Q  120 actgaccatttccattgatcaccattgagacttatatacttcatctattatttcataatacaacttgcaatgtcatgcataatagaatttaggcttaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2671450 actgaccatttccattgatcaccattgagacttatatacttcatctattatttcataatacaacttgcaatgtcatgtataatagaatttaggcttaaat 2671549  T
Q  220 aagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatc-nnnnnnngttgcgaaacaacccctgtatttacttaatattttgacatt 318  Q
    ||||||||||| | ||||||||||||||||||| ||||||||   ||||||        ||||||||||||||||||||||||||||| |||||||||||    
T  2671550 aagaaaaaggtccctgtaagttcgcgcatttttggttttagtccctgtatcttttttttgttgcgaaacaacccctgtatttacttaacattttgacatt 2671649  T
Q  319 cgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattagagggactaaa 418  Q
    |||||||||||||| |||||||         || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2671650 cgtccctgccgtccgtttccgt-caaaaaaacgattctctggctaacggactaatatgtgccatatgatgagctgacaattggctattagagggactaaa 2671748  T
Q  419 accaaaaatgcaaatttacatagggac 445  Q
    |||||||| ||||||||||||||||||    
T  2671749 accaaaaacgcaaatttacatagggac 2671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 445
Target Start/End: Original strand, 20945859 - 20946094
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 308  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||  |||||||       |||||||||||| |||| ||||||||||| |    
T  20945859 taggcttaaataagaaaaaggtctttgtaagttcgcgcattttttgttttagtctttgtatctttttttgttgcgaaacaatccctatatttacttaaca 20945958  T
Q  309 ttttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattag 408  Q
    ||||| ||||||||||||| |||| |||||||         |||||  ||| |||||||||||||||||||||||||||||| || ||||||| ||||||    
T  20945959 ttttggcattcgtccctgctgtccgtttccgt-caaaaaaacgctttgctgactaacggactaatatgtggcatatgatgagttggcaattggttattag 20946057  T
Q  409 agggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||||||||||||||  |||||||||| ||||||    
T  20946058 agggactaaaaccaaaaacacaaatttacacagggac 20946094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 11148348 - 11148479
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 308  Q
    |||||||||||||| ||||||| | |||||||| |||| ||||| ||||||||   | ||||       ||||||||||||||| |||||||||||||      
T  11148348 taggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtcgctatatctttttttgttgcgaaacaacccttgtatttacttaacc 11148447  T
Q  309 ttttgacattcgtccctgccgtccatttccgt 340  Q
    |||||| ||| |||||||||||| ||||||||    
T  11148448 ttttgaaattggtccctgccgtctatttccgt 11148479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 28426836 - 28426884
Alignment:
Q  213 cttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  28426836 cttaaataagtaaaaggtccatgtaagttggcgcattttttgttttagt 28426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 23702398 - 23702444
Alignment:
Q  212 gcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||| | ||||||| | |||||||||||||||||||||||||    
T  23702398 gcttaaatatgtaaaaggtccttgtaagttcgcgcattttttgtttt 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 2673024 - 2672972
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||||||| ||||| |  ||||||||| |||||||||| ||||||||    
T  2673024 taggcttaaataagtaaaagatctatgtaagttggcgcatttttggttttagt 2672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 4906128 - 4906176
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4906128 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4906176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 4933391 - 4933343
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4933391 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 29756271 - 29756319
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  29756271 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 29756319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 55019421 - 55019369
Alignment:
Q  206 atttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||||||| | ||| ||| | ||||| |||||||||||||||||||    
T  55019421 atttaggcttaaatatgtaaatggtccttgtaatttcgcgcattttttgtttt 55019369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 210 - 444
Target Start/End: Complemental strand, 7274711 - 7274478
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 309  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||       ||||||||||||||||||||||||||||| ||    
T  7274711 aggcttaaataagaaaaaggtccctgtaagttcgcgcattttttgttttagttcctgtatctttttttgttgcgaaacaacccctgtatttacttaacat 7274612  T
Q  310 tttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattaga 409  Q
    ||||||||||||||| ||||||| |||||||         |||||| |||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  7274611 tttgacattcgtccccgccgtccgtttccgt-caaaaaaacgcttcgctggctaacggactaatatgtggcatatgatgagttggcaattggttattaga 7274513  T
Q  410 gggactaaaaccaaaaatgcaaatttacataggga 444  Q
    | |||||||||||||||||||||||||||||||||    
T  7274512 gagactaaaaccaaaaatgcaaatttacataggga 7274478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 359374 - 359326
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | |||||||||||||||||||||||||    
T  359374 aggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 359326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 45447074 - 45447126
Alignment:
Q  279 ttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 331  Q
    |||||||||||||| ||||||| |||||  |||||| ||||||||||||||||    
T  45447074 ttgcgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtc 45447126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 21142480 - 21142526
Alignment:
Q  212 gcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||| | ||||||| | |||||||||||||||||||||||||    
T  21142480 gcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 21142526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 357975 - 358024
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  357975 taggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 7272898 - 7272950
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||||||| |||||||   |||||||| |||||||||| ||||||||    
T  7272898 taggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagt 7272950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 7273108 - 7273144
Alignment:
Q  409 agggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||||||||||||||||||| || ||||||||||    
T  7273108 agggactaaaaccaaaaatgcaatttaacatagggac 7273144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 211 - 438
Target Start/End: Original strand, 55196574 - 55196802
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnn-gttgcgaaacaacccctgtatttacttaatat 309  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||||   ||||||        ||||||||||||||||||||||||||||| |     
T  55196574 ggcttaaataagaaaaaggtccttgtaagttcgcgcatttttggttttagtccatgtatcttttttttgttgcgaaacaacccctgtatttacttaacac 55196673  T
Q  310 tttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattaga 409  Q
    ||||||||||||||||||||||| |||||||         |||||| |||||||||||||||||| || |||||||||||| || ||||||| |||||||    
T  55196674 tttgacattcgtccctgccgtccgtttccgtaaaaaaaaacgcttcgctggctaacggactaatacgtcgcatatgatgagttggcaattggttattaga 55196773  T
Q  410 gggactaaaaccaaaaatgcaaatttaca 438  Q
    |||||||||||||||||||||||| ||||    
T  55196774 gggactaaaaccaaaaatgcaaatgtaca 55196802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 207 - 445
Target Start/End: Original strand, 1676979 - 1677216
Alignment:
Q  207 tttaggcttaaataagaaaaaggttcatg-taagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttactta 305  Q
    ||||||||||||||||||||| || |||| ||||| | | ||||||| ||||||||   ||||||       ||||||||||||| ||| ||||||||||    
T  1676979 tttaggcttaaataagaaaaacgt-catggtaagtacacacatttttggttttagtccctgtatctttttttgttgcgaaacaactcctatatttactta 1677077  T
Q  306 atattttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctat 405  Q
    | ||||||||||||||||||||||||| |||||||         |||||| |||| |||||||| |||||||||||||||||||| |||||||||| |||    
T  1677078 acattttgacattcgtccctgccgtccgtttccgtcaaaaaaa-cgcttcgctggttaacggaccaatatgtggcatatgatgagttgacaattggttat 1677176  T
Q  406 tagagggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  1677177 tagagggactaaaaccaaaaacgcaaatttacatagggac 1677216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 13645394 - 13645306
Alignment:
Q  357 ctggctaacggactaatatgtggcatatgatgagctgacaat-tggctattagagggactaaaaccaaaaatgcaaatttacataggga 444  Q
    ||||||||||| |||||||||||||  ||||||| ||| ||  ||| || |||||||||||||||| |||| |||||||||||||||||    
T  13645394 ctggctaacgggctaatatgtggcacttgatgagttgataaactggttagtagagggactaaaacctaaaacgcaaatttacataggga 13645306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 3025822 - 3025873
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  3025822 aggcttaaataagtaaaaggttcctgtaagttggcgcattttttgttttagt 3025873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 39870450 - 39870511
Alignment:
Q  207 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgta 268  Q
    |||||||||||||||| ||||||||| ||||||||  ||| ||||||||||||||| |||||    
T  39870450 tttaggcttaaataagtaaaaggttcttgtaagttgacgcgttttttgttttagttcttgta 39870511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 13645047 - 13645086
Alignment:
Q  406 tagagggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13645047 tagagggactaaaaccaaaaacgcaaatttacatagggac 13645086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 3149329 - 3149391
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 340  Q
    ||||||||||||||| |||||||||||||  |||||| ||| ||| |||||||| ||||||||    
T  3149329 gttgcgaaacaacccttgtatttacttaaccttttgaaattggtctctgccgtctatttccgt 3149391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 34594453 - 34594493
Alignment:
Q  404 attagagggactaaaaccaaaaatgcaaatttacataggga 444  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  34594453 attagagggactaaaaccaaaaacggaaatttacataggga 34594493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 5377807 - 5377857
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||||| ||||||| | ||||| || |||||||||||||||||||    
T  5377807 ggcttaaataagtaaaaggtccctgtaaattggcgcattttttgttttagt 5377857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 27662719 - 27662665
Alignment:
Q  208 ttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagtt 262  Q
    ||||||||||||||| ||||||| |  ||||||| |||| |||||||||||||||    
T  27662719 ttaggcttaaataagtaaaaggtcccggtaagttagcgcgttttttgttttagtt 27662665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 24613669 - 24613624
Alignment:
Q  213 cttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||| | ||||||| | |||||||||||||||||||||||||    
T  24613669 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 24613624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 27661162 - 27661215
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 331  Q
    ||||||||||||||  |||||||||||||| |||||| ||| ||| ||||||||    
T  27661162 gttgcgaaacaacctttgtatttacttaattttttgaaattggtctctgccgtc 27661215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 1678624 - 1678588
Alignment:
Q  409 agggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  1678624 agggactaaaaccaaaaaagcaaattaacatagggac 1678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 5387104 - 5387068
Alignment:
Q  409 agggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||||||||||||||||||| || ||||||||||    
T  5387104 agggactaaaaccaaaaatgcaatttaacatagggac 5387068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 55198380 - 55198328
Alignment:
Q  207 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttta 259  Q
    ||||| |||||||||| ||||||| | ||||| || |||||||||||||||||    
T  55198380 tttagacttaaataagtaaaaggtccttgtaaattggcgcattttttgtttta 55198328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 211 - 445
Target Start/End: Complemental strand, 5696428 - 5696195
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatatt 310  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||||||  |||||||       |||| ||||||||| |||||||||||||| |||    
T  5696428 ggcttaaataagaaaaaggtccatgtaagtttgcgcatttttagttttagtctttgtatctttttttgttgtgaaacaacctctgtatttacttaacatt 5696329  T
Q  311 ttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattagag 410  Q
    ||||||||||||||| |||||  |||| ||           |||| |||||||||||||||||| ||||||||||||||| || ||||||  ||||||||    
T  5696328 ttgacattcgtccctaccgtctgtttctgtcaaaaaaat-acttcgctggctaacggactaatacgtggcatatgatgagttggcaattgattattagag 5696230  T
Q  411 ggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    |||||||||||||||| | ||||||||| ||||||    
T  5696229 ggactaaaaccaaaaacgtaaatttacacagggac 5696195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 336
Target Start/End: Complemental strand, 28167386 - 28167264
Alignment:
Q  214 ttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatattttg 313  Q
    ||||||||| ||||||| | |||||||| |||| ||||| ||||||||  |||||||       ||||||||||||||| |||||||||||||  |||||    
T  28167386 ttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttg 28167287  T
Q  314 acattcgtccctgccgtccattt 336  Q
    | ||| ||| |||||||| ||||    
T  28167286 aaattggtctctgccgtctattt 28167264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 16288508 - 16288560
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagtta 263  Q
    |||||||||||||| |||||  |||||| ||||||||||||||||||||||||    
T  16288508 ggcttaaataagaagaaggtctatgtaaattcgcgcattttttgttttagtta 16288560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 30545708 - 30545768
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttcc 338  Q
    ||||| ||||||| | ||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  30545708 gttgcaaaacaactcttgtatttacttaatattttgaaattggtccctgtcgtccgtttcc 30545768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 10343988 - 10344035
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||||||    
T  10343988 ggcttaaatatgtaaaaggtccatgtaagttcgtgcattttttgtttt 10344035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 22060219 - 22060172
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  22060219 ggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggtttt 22060172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 9262951 - 9262901
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||||| ||||||||| ||||||||||||| | ||| ||||||||    
T  9262951 ggcttaaataagtaaaaggttcctgtaagttcgcgcgtatttggttttagt 9262901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 9662074 - 9662037
Alignment:
Q  408 gagggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  9662074 gagggaccaaaaccaaaaatgcaaatttgcatagggac 9662037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 16288959 - 16288910
Alignment:
Q  282 cgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 331  Q
    ||||||||||| ||||||| |||||  |||||| ||||||||||||||||    
T  16288959 cgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtc 16288910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 28165655 - 28165708
Alignment:
Q  208 ttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    ||||||||||||| | ||||||| |||||||||| |||| ||||| ||||||||    
T  28165655 ttaggcttaaatatgtaaaaggtccatgtaagttagcgcgtttttggttttagt 28165708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 22054333 - 22054381
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  22054333 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 22054381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 43516397 - 43516445
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  43516397 aggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgtttt 43516445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 44820990 - 44820942
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  44820990 aggcttaaatatgtaaaaggtccctgtaaattcgcgcattttttgtttt 44820942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 441
Target Start/End: Original strand, 43882053 - 43882283
Alignment:
Q  210 aggcttaaataagaaaaa-ggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 308  Q
    |||||||||||||||||| ||  | ||||||||||||| ||||| ||||||||   ||||||       |||||||||||||||||||||||||| || |    
T  43882053 aggcttaaataagaaaaaaggcccttgtaagttcgcgcttttttggttttagtccctgtatctttttt-gttgcgaaacaacccctgtatttactaaaca 43882151  T
Q  309 ttttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattag 408  Q
    |||||||||||||||||||||| | ||   ||         | |||| ||| ||||||||||||||  ||||||||||||||  ||||||||| ||||||    
T  43882152 ttttgacattcgtccctgccgtgcgttcttgtcaaaaaaa-cacttcgctgactaacggactaatacatggcatatgatgagtcgacaattggttattag 43882250  T
Q  409 agggactaaaaccaaaaatgcaaatttacatag 441  Q
    |||||||||||||||||| | ||||||||||||    
T  43882251 agggactaaaaccaaaaacgaaaatttacatag 43882283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 46605982 - 46605861
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 309  Q
    ||||||||||||||||||||| | || |||| ||||| ||||||||||||||   ||||         ||||||||||||||| ||||||| |||||  |    
T  46605982 aggcttaaataagaaaaaggtccctgaaagtccgcgcgttttttgttttagtccctgtaagtttttttgttgcgaaacaacccttgtattttcttaactt 46605883  T
Q  310 tttgacattcgtccctgccgtc 331  Q
    ||||| ||||||||||||||||    
T  46605882 tttgaaattcgtccctgccgtc 46605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 33753702 - 33753757
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtcca 333  Q
    ||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||    
T  33753702 gttgcgagacaacccctgtatttacgaaatgttttgacattcgtccctgccgtcca 33753757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 340
Target Start/End: Original strand, 13222914 - 13223042
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatatt 310  Q
    |||||||||||| ||||||| | |||||||| || | ||||| ||||||||   ||||||       ||||||||||||||| |||||||| ||||  ||    
T  13222914 ggcttaaataagtaaaaggtccctgtaagttagcacgtttttggttttagtccgtgtatctttttt-gttgcgaaacaacccttgtatttatttaacctt 13223012  T
Q  311 ttgacattcgtccctgccgtccatttccgt 340  Q
    |||| ||| |||||||||||| ||||||||    
T  13223013 ttgaaattggtccctgccgtctatttccgt 13223042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 26734422 - 26734473
Alignment:
Q  207 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  26734422 tttaggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggtttt 26734473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 43883865 - 43883814
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    ||||||||||||| ||||||| |||||||||| | |||||||||||||||||    
T  43883865 aggcttaaataagtaaaaggtccatgtaagttggtgcattttttgttttagt 43883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 12098001 - 12097949
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 261  Q
    |||||||||||||| ||||||| |  |||||||||||||||||| ||||||||    
T  12098001 taggcttaaataagtaaaaggtccccgtaagttcgcgcatttttggttttagt 12097949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 31809988 - 31810036
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | |||||||||||||||||||||||||    
T  31809988 aggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 31810036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 8322521 - 8322568
Alignment:
Q  211 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||| | ||||||| | |||||||||||||||||||||||||    
T  8322521 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 8322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 33755298 - 33755245
Alignment:
Q  287 caacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 340  Q
    ||||||||||||||||  ||  |||||| |||||||||||||||||| ||||||    
T  33755298 caacccctgtatttaccaaacgttttgatattcgtccctgccgtccaattccgt 33755245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Complemental strand, 37402474 - 37402445
Alignment:
Q  415 taaaaccaaaaatgcaaatttacataggga 444  Q
    ||||||||||||||||||||||||||||||    
T  37402474 taaaaccaaaaatgcaaatttacataggga 37402445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 8323499 - 8323451
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  8323499 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 8323451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 9627641 - 9627593
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | |||||||   |||||||||||||||||||||||||    
T  9627641 aggcttaaatatgtaaaaggtctctgtaagttcgcgcattttttgtttt 9627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 31815830 - 31815782
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  31815830 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 31815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 340
Target Start/End: Complemental strand, 38758380 - 38758247
Alignment:
Q  207 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaa 306  Q
    |||||||||||||||| ||||||| | |||||||| |||| ||||| ||||||||   ||||||       ||||||||||||||| |||||||||||||    
T  38758380 tttaggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttacttaa 38758281  T
Q  307 tattttgacattcgtccctgccgtccatttccgt 340  Q
      |||||| ||| |||||| ||||| ||||||||    
T  38758280 ccttttgaaattggtccctaccgtctatttccgt 38758247  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 5975563 - 5975480
Alignment:
Q  362 taacggactaatatgtggcatatgatgagctgacaattggctattagagggactaaaaccaaaaatgcaaatttacatagggac 445  Q
    |||||||| ||||| |||||  ||||||  || ||| ||| || ||||||||||||||| ||||||||||||||||||||||||    
T  5975563 taacggaccaatatatggcacttgatgaattggcaactggttagtagagggactaaaacaaaaaatgcaaatttacatagggac 5975480  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 27161987 - 27161932
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtcca 333  Q
    ||||||| |||||||||||||||||  ||| ||||||||||| ||| |||||||||    
T  27161987 gttgcgagacaacccctgtatttacgaaatgttttgacattcatccatgccgtcca 27161932  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 27160380 - 27160434
Alignment:
Q  286 acaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 340  Q
    |||||||||||||||||  ||  ||||||||||||||| ||||||||| ||||||    
T  27160380 acaacccctgtatttaccaaacgttttgacattcgtccatgccgtccaattccgt 27160434  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 41385870 - 41385821
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||| | ||| ||| | |||||||||||||||||||||||||    
T  41385870 taggcttaaatatgtaaatggtccctgtaagttcgcgcattttttgtttt 41385821  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 41591509 - 41591562
Alignment:
Q  205 aatttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||| ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  41591509 aattaaggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgtttt 41591562  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 41384148 - 41384196
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||| ||| | |||||||||||||||||||||||||    
T  41384148 aggcttaaatatgtaaatggtccttgtaagttcgcgcattttttgtttt 41384196  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 33489959 - 33489829
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 309  Q
    ||||||||||||| |||| || | |||||||| |||| ||||| ||||||||   ||||||       |||||||||||||||||||||||||||||  |    
T  33489959 aggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgtatctttttttgttgcgaaacaacccctgtatttacttaactt 33489860  T
Q  310 tttgacattcgtccctgccgtccatttccgt 340  Q
    ||| | ||| | |||||||||| ||||||||    
T  33489859 tttaaaattggcccctgccgtctatttccgt 33489829  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 35929589 - 35929651
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 340  Q
    ||||||| |||||||||||||||||  ||  ||||||||||||||||||||||||| ||||||    
T  35929589 gttgcgagacaacccctgtatttaccaaacgttttgacattcgtccctgccgtccaattccgt 35929651  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 6535634 - 6535572
Alignment:
Q  278 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 340  Q
    ||||||||||||||| |||||||||||||  |||||| ||| || | ||||||| ||||||||    
T  6535634 gttgcgaaacaacccttgtatttacttaaccttttgaaattggttcttgccgtctatttccgt 6535572  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 9672412 - 9672363
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||||   ||||||| | |||||||||||||||||||||||||    
T  9672412 taggcttaaatatataaaaggtccctgtaagttcgcgcattttttgtttt 9672363  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 4322 - 4269
Alignment:
Q  205 aatttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4322 aatttaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4269  T

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Target: scaffold0517 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Original strand, 5602 - 5631
Alignment:
Q  415 taaaaccaaaaatgcaaatttacataggga 444  Q
    ||||||||||||||||||||||||||||||    
T  5602 taaaaccaaaaatgcaaatttacataggga 5631  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 13312 - 13263
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||| | ||||||| | ||||||||| |||||||||||||||    
T  13312 taggcttaaatatgtaaaaggtccctgtaagttcacgcattttttgtttt 13263  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 19402183 - 19402134
Alignment:
Q  209 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    |||||||||||| | ||||||| | ||||||||||| |||||||||||||    
T  19402183 taggcttaaatatgtaaaaggtccttgtaagttcgcacattttttgtttt 19402134  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 843581 - 843533
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  843581 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 843533  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 11065714 - 11065666
Alignment:
Q  210 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 258  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  11065714 aggcttaaatatgtaaaaggtccttgtaagttcgcgcatttttggtttt 11065666  T

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