View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_2 (Length: 730)
Name: NF11217_low_2
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 195 - 713
Target Start/End: Original strand, 36733450 - 36733969
Alignment:
| Q |
195 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactacaacnnnnnnnnnnggttacaataacatgg |
290 |
Q |
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| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactacta---aaaaaaaaggttacaataacatgg |
36733546 |
T |
|
| Q |
291 |
ttgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacc |
390 |
Q |
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| T |
36733547 |
ttgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttacc |
36733646 |
T |
|
| Q |
391 |
tccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctata |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36733647 |
tccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctata |
36733746 |
T |
|
| Q |
491 |
atacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtc |
590 |
Q |
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| T |
36733747 |
atacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtc |
36733846 |
T |
|
| Q |
591 |
ctcaaagttcagctgttgattatctaacatatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtc |
690 |
Q |
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| T |
36733847 |
ctcaaagttcagctgttgattatctaacatatggctcacaagatttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtc |
36733946 |
T |
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| Q |
691 |
tgaacttcttggtggtaacacat |
713 |
Q |
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| T |
36733947 |
tgaacttcttggtggtaacacat |
36733969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 36733299 - 36733429
Alignment:
| Q |
1 |
tgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctnnnnnnnnttgagagcaacacataatc |
100 |
Q |
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| T |
36733299 |
tgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctaaaaaaacttgagagcaacacataatc |
36733398 |
T |
|
| Q |
101 |
gtccttttccaaatcaaataacgaatatgat |
131 |
Q |
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| T |
36733399 |
gtccttttccaaatcaaataacgaatatgat |
36733429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
147 |
taacgaatatgatcaaacacaaactacaatataa |
180 |
Q |
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| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 573
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
459 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
558 |
Q |
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||||||| ||||||| |||||||||| ||||| || ||||||||||| || || |||||| | ||| |||| | |||||| || ||||||||||| |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
559 |
taaaactcacgaaac |
573 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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