View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_20 (Length: 317)

Name: NF11217_low_20
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_20
NF11217_low_20
[»] chr8 (3 HSPs)
chr8 (59-303)||(32914507-32914755)
chr8 (1-31)||(16383411-16383441)
chr8 (1-31)||(34307250-34307280)
[»] chr7 (3 HSPs)
chr7 (1-48)||(27744345-27744392)
chr7 (1-31)||(22343395-22343425)
chr7 (1-31)||(32564462-32564492)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-31)||(152532-152562)
[»] chr6 (3 HSPs)
chr6 (1-31)||(15508060-15508090)
chr6 (1-31)||(15990078-15990108)
chr6 (1-31)||(30341396-30341426)
[»] chr5 (2 HSPs)
chr5 (1-31)||(2252204-2252234)
chr5 (1-31)||(3921301-3921331)
[»] chr4 (3 HSPs)
chr4 (1-31)||(17983779-17983809)
chr4 (1-31)||(50813928-50813958)
chr4 (2-31)||(29589777-29589806)
[»] chr2 (4 HSPs)
chr2 (1-31)||(2997523-2997553)
chr2 (1-31)||(17820040-17820070)
chr2 (1-31)||(43490155-43490185)
chr2 (1-29)||(13365389-13365417)
[»] chr1 (1 HSPs)
chr1 (1-31)||(50591036-50591066)
[»] chr3 (1 HSPs)
chr3 (1-30)||(36331365-36331394)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 32914755 - 32914507
Alignment:
Q  59 cgaaccttccaaccccacgacacctataattagccagaagcagtcatgcgaggcaacactaacatcagctgaaacaaagaagacatacaaggtaaacttg 158  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914755 cgaaccttccaaccccacgacacctaaaattagccagaagcagtcatgcgaggcaacactaacatcagctgaaacaaagaagacatacaaggtaaacttg 32914656  T
Q  159 atattctgaacctttctattatgaaattctcttccaatttcctactcatatctttattcttccctttatattttgtagattatttattatatactgtttc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914655 atattctgaacctttctattatgaaattctcttccaatttcctactcatatctttattcttccctttatattttgtagattatttattatatactgtttc 32914556  T
Q  259 aagttg----atgttcaatgatgggagcaagactaaattgtatatcttg 303  Q
    ||||||    |||||||||||||||||||||||||||||||||||||||    
T  32914555 aagttgatatatgttcaatgatgggagcaagactaaattgtatatcttg 32914507  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16383441 - 16383411
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  16383441 gtcagatttttgtgtgggtgtcaaggggtgt 16383411  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34307280 - 34307250
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  34307280 gtcagatttttgtgtgggtgtcaaggggtgt 34307250  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27744345 - 27744392
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgtttatgtatcataactct 48  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  27744345 gtcagatttttgtgtgggtatcaaagggtgtctatgtatcataactct 27744392  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22343425 - 22343395
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  22343425 gtcagatttttgtgtgggtgtcaaggggtgt 22343395  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32564462 - 32564492
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  32564462 gtcagatttttgtgtgggtgtcaaggggtgt 32564492  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 152562 - 152532
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  152562 gtcagatttttgtgtgggtgtcaaggggtgt 152532  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15508060 - 15508090
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  15508060 gtcagatttttgtgtgggtgtcaaggggtgt 15508090  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15990078 - 15990108
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  15990078 gtcagatttttgtgtgggtgtcaaggggtgt 15990108  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30341396 - 30341426
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  30341396 gtcagatttttgtgtgggtgtcaaggggtgt 30341426  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2252204 - 2252234
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  2252204 gtcagatttttgtgtgggtgtcaaggggtgt 2252234  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3921301 - 3921331
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  3921301 gtcagatttttgtgtgggtgtcaaggggtgt 3921331  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17983779 - 17983809
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  17983779 gtcagatttttgtgtgggtgtcaaggggtgt 17983809  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50813928 - 50813958
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  50813928 gtcagatttttgtgtgggtgtcaaggggtgt 50813958  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 29589777 - 29589806
Alignment:
Q  2 tcagatttttgtgtgggtgtcaaggggtgt 31  Q
    ||||||||||||||||||||||||||||||    
T  29589777 tcagatttttgtgtgggtgtcaaggggtgt 29589806  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2997523 - 2997553
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  2997523 gtcagatttttgtgtgggtgtcaaggggtgt 2997553  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17820040 - 17820070
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  17820040 gtcagatttttgtgtgggtgtcaaggggtgt 17820070  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43490185 - 43490155
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  43490185 gtcagatttttgtgtgggtgtcaaggggtgt 43490155  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13365417 - 13365389
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggt 29  Q
    |||||||||||||||||||||||||||||    
T  13365417 gtcagatttttgtgtgggtgtcaaggggt 13365389  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50591036 - 50591066
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  50591036 gtcagatttttgtgtgggtgtcaaggggtgt 50591066  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36331365 - 36331394
Alignment:
Q  1 gtcagatttttgtgtgggtgtcaaggggtg 30  Q
    ||||||||||||||||||||||||||||||    
T  36331365 gtcagatttttgtgtgggtgtcaaggggtg 36331394  T

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