View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_21 (Length: 317)
Name: NF11217_low_21
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 34420581 - 34420291
Alignment:
| Q |
11 |
cacagagagctctgttgctgtagtgtctgagccacaaaatgccgtccaatcatttactaccatgccagatgctattacttcactaccgcgattgacagtc |
110 |
Q |
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| T |
34420581 |
cacagagagctctgttgctgtagtgtctgagccacaaaatgccgtccaatcatttactaccatgccagatgctattacttcactaccgcgattgacagtc |
34420482 |
T |
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| Q |
111 |
cctgcaaccaacggaatttgaagaagtgtagagagttcatccaagtcttcaacagaagtatgagggtggacctgcattcagtgtatatgatcaaaagata |
210 |
Q |
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| T |
34420481 |
cctgcaaccaacggaatttgaagaagtgtagagagttcatccaagtcttcaacagaagtatgagggtggacctgcattcagtgtatatgatcaaaagata |
34420382 |
T |
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| Q |
211 |
gaacatttattcaagttgaaacattcaaaaggacatgtcttgcacctaccaaaccacctctgttggacagagcacagtaactgccagaaag |
301 |
Q |
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| T |
34420381 |
gaacatttattcaagttgaaacattcaaaaggacatgtcttgcacctaccaaaccacctctgttggacagagcacagtaactgccagaaag |
34420291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 34424715 - 34424436
Alignment:
| Q |
15 |
gagagctctgttgctgtagtgtctgagccacaaaatgccgtccaatcatttactaccatgccagatgctattacttcactaccgcgattgacagtccctg |
114 |
Q |
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| T |
34424715 |
gagagttctgttgctgtagtgtctgaaccacaaaatgctgtccaatcatttactgtcatgccagctgctattacttcgctaccacggttcacagttccgg |
34424616 |
T |
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| Q |
115 |
caaccaacggaatttgaagaagtgtagagagttcatccaagtcttcaacagaagtatgagggtggacctgcattcagtgtatatgatcaaaag--ataga |
212 |
Q |
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| T |
34424615 |
caaccaaaggaacttgaagaagtgtagatagttcatccaagtcttcaatggaagtatgagggtgaacctggattcagtg-at-tggtcaaaagatataaa |
34424518 |
T |
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| Q |
213 |
acatttattcaagttgaaacattcaaaaggac--atgtcttgcacctaccaaaccacctctgttggacagagcacagtaact |
292 |
Q |
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| T |
34424517 |
agatttattaaaattgaaacattcaagaggacatatgtcttgcacttaccaaaccacctttgttcgaaaaagcacagtaact |
34424436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 24347789 - 24347614
Alignment:
| Q |
12 |
acagagagctctgttgctgtagtgtctgagccacaaaatgccgtccaatcatttactaccatgccagatgctattacttcactaccgcgattgacagtcc |
111 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||| ||||| || || |||| ||| |||| ||||| ||||||||||| | || || || | |
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| T |
24347789 |
acagagagttctgttgctgtggtgtctgaaccacaaaatgatgtccagtcgttaactatcattccagcagctatcacttcactacctctgttcactgttc |
24347690 |
T |
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| Q |
112 |
ctgcaaccaacggaatttgaagaagtgtagagagttcatccaagtcttcaacagaagtatgagggtggacctgcat |
187 |
Q |
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| || ||||| |||| ||||||||||||||| ||||||||||| ||||| | ||| || ||||||||||||||||| |
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| T |
24347689 |
cggccaccaaaggaacttgaagaagtgtagaaagttcatccaaatcttctatagatgtgtgagggtggacctgcat |
24347614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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