View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_27 (Length: 250)
Name: NF11217_low_27
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 26348198 - 26348439
Alignment:
| Q |
1 |
attcctccaacctacccattgcataaggatgataagtaaccctagtaccacttttcacttttgtaccatctggtaaaacatcatcatccaaacaaaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26348198 |
attcctccaacctacccattgcataaggatgataagtaaccctagttccacttttcacttttgtaccatctggtaaaacatcatcatccaaacaaaactt |
26348297 |
T |
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| Q |
101 |
tgaatcaaattgaattggtggatatagtctcatactttcatgtgctgctgcttgtaaataatgcaatttcctaagttgttcaaaattcgttacaccaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26348298 |
tgaatcaaattgaattggtggatatagtctcatactttcatgtgctgctgcttgtaaataatgcaatttcctaagttgttcaaaattcgttacaccaaaa |
26348397 |
T |
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| Q |
201 |
atattgttttcatcatcatgtggtccaattactctctctgcttct |
245 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
26348398 |
atattgttt---tcatcatgtggtccaattactctttctgcttct |
26348439 |
T |
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