View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_28 (Length: 250)

Name: NF11217_low_28
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_28
NF11217_low_28
[»] chr3 (12 HSPs)
chr3 (1-239)||(6259734-6259972)
chr3 (1-239)||(6238242-6238477)
chr3 (2-239)||(6169472-6169709)
chr3 (149-239)||(6246018-6246108)
chr3 (162-239)||(6266414-6266491)
chr3 (1-59)||(6590747-6590805)
chr3 (1-62)||(6245867-6245928)
chr3 (3-64)||(6883086-6883147)
chr3 (1-53)||(6917684-6917736)
chr3 (3-66)||(5299285-5299348)
chr3 (156-239)||(6143039-6143122)
chr3 (17-66)||(6850148-6850197)
[»] chr1 (1 HSPs)
chr1 (1-86)||(35139789-35139874)
[»] scaffold0425 (1 HSPs)
scaffold0425 (17-66)||(13256-13305)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6259734 - 6259972
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatccatgaatgatgaagtcgcaaaatcattggctccatt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||   ||| || ||| |  ||||||  |     
T  6259734 ctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatga---agtagcgaaaccgctggctctttc 6259830  T
Q  101 gtca---aaataactagttaattcaacaagtttcaatctagatttttcctttgcaagaaactctagcctcctgaccaatactttaatcctagattgaaat 197  Q
     |||   |||||| |||| || ||   ||||| |||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||| ||||    
T  6259831 ttcatataaataattagtaaactcttgaagttccaatctagatttttccattgcaagaaactctagcctcttaagcaatactttaatcctagattcaaat 6259930  T
Q  198 cgattgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  6259931 cgattgatagaacctgaaagaaagcgttgtatctttcccttt 6259972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6238242 - 6238477
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatccatgaatgatgaagtcgcaaaatcattggctccatt 100  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||  |||||||||     
T  6238242 ctgaaagtaaaaattcgactatttcctctttttcacgctctctaccatatacgatagattcagccatgaatgatgaagtagcaaaatcgctggctccatc 6238341  T
Q  101 gtcaaaataactagttaattcaacaagtttcaatctagatttttcctttgcaagaaactctagcctcctgaccaatactttaatcctagattgaaatcga 200  Q
     ||| |||||  ||  || | |  ||||| |||||||   ||||  |||||||||||||||| |||| ||| |||||||||||||||||||| |||||||    
T  6238342 ttcataataataag--aact-atgaagttgcaatctatccttttgatttgcaagaaactctaacctcttgagcaatactttaatcctagattcaaatcga 6238438  T
Q  201 ttgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    ||||||||| |||||||| ||| ||||||||||||||||    
T  6238439 ttgatagaacctgaaagatagcgttgtatctttcccttt 6238477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 6169472 - 6169709
Alignment:
Q  2 tgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatccatgaatgatgaagtcgcaaaatcattggctccattg 101  Q
    |||||||||||| |  |||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||  ||||||   |||||||||      
T  6169472 tgaaagtaaaaaatcaattatttcttctttctcatgctctctaccatatatgatagattcattcatgaatgatgaagttccaaaattgctggctccatct 6169571  T
Q  102 tcaaaataactagttaattc--aacaagtttcaatctagatttttcctttgcaagaaactctagcctcctgaccaatactttaatcctagattgaaatcg 199  Q
    |||  ||||| |  |||| |  |  ||||| |||||||   ||||  |||||||||| || ||||||| ||| |||||||||||||||||||| ||||||    
T  6169572 tcatgataacaa--taatcctgatgaagttgcaatctatcattttgttttgcaagaacctttagcctcttgatcaatactttaatcctagattcaaatcg 6169669  T
Q  200 attgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  6169670 attgatagaacctgaaagaaagcgttgtatctttcccttt 6169709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 6246018 - 6246108
Alignment:
Q  149 tgcaagaaactctagcctcctgaccaatactttaatcctagattgaaatcgattgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  6246018 tgcaagaaactctagcctcttgagcaatactttaatcctagattcaaatcgattgatagaacctgaaagaaagcgttgtatctttcccttt 6246108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 6266414 - 6266491
Alignment:
Q  162 agcctcctgaccaatactttaatcctagattgaaatcgattgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    |||||| ||| |||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||||||||||    
T  6266414 agcctcttgagcaatactttaatcctagattcaaaccgattgatagaacctgaaagaaagcgttgtatctttcccttt 6266491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6590805 - 6590747
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagat 59  Q
    |||||||||||||||| |||||||||||||||||| | |||||||||||||||| ||||    
T  6590805 ctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatatatgacagat 6590747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6245867 - 6245928
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattca 62  Q
    |||||||||||||||  |||||||| ||||||||| | |||||||||||||| | |||||||    
T  6245867 ctgaaagtaaaaattcaattatttcttctttctcatgctctctaccatatatcacagattca 6245928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 6883086 - 6883147
Alignment:
Q  3 gaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatc 64  Q
    |||||||||||||| |||| ||||||||||||| | ||||||||||  |||| |||||||||    
T  6883086 gaaagtaaaaatttaattaattcctctttctcatgctctctaccattcatgacagattcatc 6883147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6917684 - 6917736
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatg 53  Q
    |||| ||||||||||  |||||||||||||||||| | |||||||||||||||    
T  6917684 ctgatagtaaaaattcaattatttcctctttctcatgctctctaccatatatg 6917736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 5299285 - 5299348
Alignment:
Q  3 gaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatcca 66  Q
    ||||||||||||||| ||| ||||||||| ||||  ||||| ||||||||| | ||||||||||    
T  5299285 gaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatcca 5299348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 6143039 - 6143122
Alignment:
Q  156 aactctagcctcctgaccaatactttaatcctagattgaaatcgattgatagaagctgaaagaaagcattgtatctttcccttt 239  Q
    |||||||||||| | | || ||||||||| ||||||| ||||||||| ||| |||| |||||||||| |  |||||| ||||||    
T  6143039 aactctagcctcttcagcattactttaattctagattcaaatcgattaataaaagcagaaagaaagcgtcttatcttccccttt 6143122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 6850197 - 6850148
Alignment:
Q  17 gattatttcctctttctcacgttctctaccatatatgatagattcatcca 66  Q
    |||||| |||||||||||| | |||||||||||||| | |||||||||||    
T  6850197 gattatatcctctttctcatgctctctaccatatatcacagattcatcca 6850148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35139874 - 35139789
Alignment:
Q  1 ctgaaagtaaaaatttgattatttcctctttctcacgttctctaccatatatgatagattcatccatgaatgatgaagtcgcaaaa 86  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  35139874 ctgaaaataaaaatttgattatttcctctttttcacgttctctaccatatatgatagattcagccatgaatgatgaagttgcaaaa 35139789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 13305 - 13256
Alignment:
Q  17 gattatttcctctttctcacgttctctaccatatatgatagattcatcca 66  Q
    |||||| |||||||||||| | |||||||||||||| | |||||||||||    
T  13305 gattatatcctctttctcatgctctctaccatatatcacagattcatcca 13256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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