View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_32 (Length: 233)

Name: NF11217_low_32
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_32
NF11217_low_32
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-233)||(105382-105614)
[»] chr2 (21 HSPs)
chr2 (3-195)||(21578224-21578417)
chr2 (1-198)||(19564824-19565017)
chr2 (1-99)||(22311337-22311435)
chr2 (1-138)||(21748249-21748386)
chr2 (8-217)||(25916340-25916546)
chr2 (1-130)||(21548025-21548154)
chr2 (2-99)||(24764258-24764355)
chr2 (121-233)||(22311434-22311547)
chr2 (1-76)||(27765434-27765508)
chr2 (28-143)||(29409858-29409973)
chr2 (156-233)||(24764389-24764466)
chr2 (16-75)||(18848605-18848664)
chr2 (20-75)||(35665947-35666002)
chr2 (1-49)||(20588567-20588614)
chr2 (15-75)||(28449290-28449350)
chr2 (15-57)||(22132010-22132052)
chr2 (20-76)||(17417232-17417288)
chr2 (154-233)||(17417345-17417424)
chr2 (20-96)||(18922588-18922665)
chr2 (21-74)||(22268933-22268985)
chr2 (20-57)||(23959637-23959674)
[»] chr1 (14 HSPs)
chr1 (1-180)||(12668829-12669009)
chr1 (1-180)||(15650863-15651043)
chr1 (1-135)||(15787540-15787674)
chr1 (1-99)||(37283079-37283176)
chr1 (16-75)||(30805658-30805717)
chr1 (1-59)||(22049589-22049647)
chr1 (22-74)||(31584166-31584218)
chr1 (15-75)||(33439172-33439232)
chr1 (20-127)||(19018897-19019002)
chr1 (1-76)||(22638586-22638661)
chr1 (22-57)||(17087905-17087940)
chr1 (5-75)||(26898283-26898352)
chr1 (149-222)||(37283205-37283278)
chr1 (19-75)||(12398008-12398064)
[»] chr7 (12 HSPs)
chr7 (3-133)||(22975500-22975630)
chr7 (5-138)||(7185400-7185532)
chr7 (15-138)||(1775390-1775513)
chr7 (1-56)||(10646598-10646652)
chr7 (1-76)||(32957837-32957911)
chr7 (20-57)||(956830-956867)
chr7 (16-57)||(8105919-8105960)
chr7 (1-75)||(27707093-27707166)
chr7 (20-57)||(8259627-8259664)
chr7 (3-44)||(16033448-16033488)
chr7 (15-75)||(1783249-1783309)
chr7 (15-75)||(26822573-26822633)
[»] scaffold0053 (1 HSPs)
scaffold0053 (2-195)||(28058-28252)
[»] chr8 (5 HSPs)
chr8 (4-138)||(27118413-27118546)
chr8 (2-76)||(13303393-13303467)
chr8 (1-75)||(24308669-24308742)
chr8 (1-75)||(23584701-23584774)
chr8 (23-75)||(25727337-25727388)
[»] chr3 (14 HSPs)
chr3 (15-230)||(46349114-46349331)
chr3 (106-195)||(27485788-27485878)
chr3 (1-57)||(5554706-5554761)
chr3 (2-69)||(16198785-16198851)
chr3 (15-75)||(17119273-17119333)
chr3 (15-100)||(38076156-38076240)
chr3 (2-57)||(14332547-14332601)
chr3 (1-58)||(4514938-4514994)
chr3 (26-76)||(12393375-12393425)
chr3 (23-57)||(17034278-17034312)
chr3 (21-58)||(27405759-27405796)
chr3 (34-99)||(27485685-27485750)
chr3 (23-75)||(4767495-4767547)
chr3 (2-46)||(14252264-14252307)
[»] chr6 (6 HSPs)
chr6 (117-233)||(14271970-14272087)
chr6 (1-138)||(10821283-10821419)
chr6 (15-74)||(4312638-4312697)
chr6 (1-73)||(17291770-17291841)
chr6 (163-217)||(18615125-18615179)
chr6 (1-71)||(22562503-22562572)
[»] chr5 (6 HSPs)
chr5 (1-101)||(24492203-24492303)
chr5 (1-75)||(30608010-30608084)
chr5 (117-233)||(6998768-6998885)
chr5 (1-57)||(24838111-24838166)
chr5 (23-99)||(25604554-25604630)
chr5 (1-75)||(26014016-26014089)
[»] chr4 (15 HSPs)
chr4 (106-217)||(19555159-19555270)
chr4 (1-56)||(11419991-11420045)
chr4 (121-229)||(22222557-22222666)
chr4 (1-58)||(17473875-17473931)
chr4 (19-75)||(47575883-47575939)
chr4 (154-233)||(18446074-18446153)
chr4 (1-75)||(21821900-21821973)
chr4 (1-58)||(21588085-21588142)
chr4 (15-75)||(11545454-11545514)
chr4 (15-59)||(18446239-18446283)
chr4 (3-75)||(21809754-21809825)
chr4 (1-56)||(8911945-8912000)
chr4 (3-58)||(20896907-20896961)
chr4 (20-53)||(15736938-15736971)
chr4 (15-75)||(11449240-11449300)
[»] scaffold0650 (1 HSPs)
scaffold0650 (1-58)||(6198-6254)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-75)||(319203-319257)


Alignment Details
Target: scaffold0024 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 105382 - 105614
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  105382 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccatgagtcaacatactaaatcagaagaaaatgacgtctcttagaagctgaagat 105481  T
Q  101 ttgcttcattagactatgtggagatcatcagactcagacgacctagcagacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  105482 ttgcttcattagactatgtggagatcatcagactcagacgacctagcagacatagaagaccccatcaaacttggaagaccttcagactttagaagcactc 105581  T
Q  201 gagggacccaaactccatgtcaaatttgtcgtc 233  Q
    |||||||||||||||||||||||||||||||||    
T  105582 gagggacccaaactccatgtcaaatttgtcgtc 105614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 21578417 - 21578224
Alignment:
Q  3 agaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagattt 102  Q
    ||||||| ||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| |||| ||||| ||||||||     
T  21578417 agaagcttaaaagattatggtagaagatctggagaaaggtcaaccagaagtcaacatattgaattagaagaaaaagacgcctctcagaagttgaagattg 21578318  T
Q  103 gcttcattagactatgtggagatcatcagactcagacgacctag-cagacgcagaagaccccatcaaacttggaagaccttcagactttagaag 195  Q
     | |||| |||||||||||||||||||| | ||||| ||||||| ||||  ||||||||||||||| ||| ||||||||||||||||| |||||    
T  21578317 acatcatcagactatgtggagatcatcaaaatcagaagacctagccagaatcagaagaccccatcagactcggaagaccttcagacttcagaag 21578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19565017 - 19564824
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||  ||||||||||||| |||||||||||| || |||||| |  |||| ||||     
T  19565017 agagaagctcaaa-gactatggtagaagacctgaagaaagttcaaccagcagtcaacatattggatcagaagaaaaggatgtctctcaatagctaaaga- 19564920  T
Q  101 ttgcttcattagactatgtggagatcatcagactcagacgacctag-cagacgcagaagaccccatcaaacttggaagaccttcagactttagaagcac 198  Q
         |||| ||||| ||||||||||| |||||||| |  |||||| ||||| |||||||||||||||||| |||||||| ||||||||| ||||||||    
T  19564919 ---gatcatcagactctgtggagatcaccagactcaaaaaacctagccagacacagaagaccccatcaaacctggaagacattcagacttcagaagcac 19564824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 22311337 - 22311435
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaaga 99  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||| |||| ||||||||||||    
T  22311337 agagaagctcaatagactatggtagaagatctaaagaaaggtcaaccagaagtcaacatattggatcagaagaaaaggacgcctctaagaagctgaaga 22311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21748249 - 21748386
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||| | || ||||| |||||||    
T  21748249 agagaagcttaaaagactatggtagaagatctgaagaaaggtcaaccacaagtcaacatcttggatcagaagaaaaggacgccactcagaagttgaagat 21748348  T
Q  101 ttgcttcattagactatgtggagatcatcagactcaga 138  Q
    |  | |||| ||||| |||  ||||||||| |||||||    
T  21748349 taacctcatcagactttgtaaagatcatcacactcaga 21748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 25916340 - 25916546
Alignment:
Q  8 ctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgcttc 107  Q
    |||||| |||||||||||||||||| | ||||||||||||| ||||||||  |||| || ||||||||| |||  |||| ||||||||||||      ||    
T  25916340 ctcaaaagactatggtagaagatctaatgaaaggtcaaccagaagtcaactcattggattagaagaaaaggacacctctcagaagctgaaga----gatc 25916435  T
Q  108 attagactatgtggagatcatcagactcagacgacct-agcagacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgaggga 206  Q
    || | ||| |||||| ||||| ||||||||| ||||| | ||||| ||| ||||||||||  |||||||||||||||| |||| | ||||||| || |||    
T  25916436 atcaaactctgtggatatcattagactcagaagacctaaccagacacaggagaccccatctgacttggaagaccttcatacttcataagcacttgaagga 25916535  T
Q  207 cccaaactcca 217  Q
    |||| ||||||    
T  25916536 cccagactcca 25916546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 21548025 - 21548154
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||| || ||| | |||||||||  |||| |||| ||||||| |||||    
T  21548025 agagaagctcaaaagactgtggtagaagatctgaagaaaggtcaaccatgggtcaaaatcttggaacagaagaaatggacgcctctcagaagctaaagat 21548124  T
Q  101 ttgcttcattagactatgtggagatcatca 130  Q
    | || |||| | ||| | || |||||||||    
T  21548125 tagcatcatcaaactctatgaagatcatca 21548154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 24764258 - 24764355
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaaga 99  Q
    |||||||||||| || ||||||| || |||| || |||| ||||||| ||||||||| |||| |||||||||||| |||| |||||||||||||||||    
T  24764258 gagaagctcaaaagaatatggtaaaatatctaaaaaaagatcaaccagaagtcaacacattggatcagaagaaaaggacgcctcttagaagctgaaga 24764355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 22311434 - 22311547
Alignment:
Q  121 gagatcatcagactcagacgacctagc-agacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatg 219  Q
    |||||||||||||||||| ||| |||| |||| || |||||||||||| |||||||||| |||||||||| | ||||||  |||||| ||| ||||||      
T  22311434 gagatcatcagactcagaagacatagccagacacataagaccccatcagacttggaagaacttcagacttcataagcacctgagggatccagactccaca 22311533  T
Q  220 tcaaatttgtcgtc 233  Q
    ||| ||||||||||    
T  22311534 tcagatttgtcgtc 22311547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27765434 - 27765508
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    |||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||  ||||||||||||    
T  27765434 agagaatctcaaa-gactatggtagaagatctgaagaaatgtcaaccagaagtcaacatcttcgatcagaagaaaa 27765508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 29409973 - 29409858
Alignment:
Q  28 gatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgcttcattagactatgtggagatca 127  Q
    ||||||||||||| ||||||| |||||||||| ||| |||||||||||| |||| |||| | ||| ||||||||  | || | ||||| | || ||||||    
T  29409973 gatctgaagaaagttcaaccagaagtcaacatcttggatcagaagaaaaggacgcctctcaaaagttgaagattaacctcgtcagactctatgaagatca 29409874  T
Q  128 tcagactcagacgacc 143  Q
    ||||||||||| ||||    
T  29409873 tcagactcagaagacc 29409858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 24764389 - 24764466
Alignment:
Q  156 aagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatgtcaaatttgtcgtc 233  Q
    |||||||||||| ||||| |||||||||| |||| | ||||||  ||||||||||||||||| |||| ||||||||||    
T  24764389 aagaccccatcagacttgaaagaccttcaaacttcataagcacctgagggacccaaactccacgtcagatttgtcgtc 24764466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 18848664 - 18848605
Alignment:
Q  16 actatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||||||||||||||||||||||||| ||||||||   ||| |||||||||||    
T  18848664 actatggtagaagatctgaagaaaggtcaaccagaagtcaacgccttggatcagaagaaa 18848605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 35665947 - 35666002
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||    
T  35665947 tggtagaagatctgaagaaaagtcaaccagaagtcaacattttggatcagaagaaa 35666002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20588567 - 20588614
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccat 49  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  20588567 agagaagctcaaa-gactatggtagaagatcttaagaaaggtcaaccat 20588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 28449290 - 28449350
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||||||||||||||||| | ||||||||   ||| |||||||||||    
T  28449290 gactatggtagaagatctgaagaaaggtcaactagaagtcaacgccttggatcagaagaaa 28449350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 22132010 - 22132052
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  22132010 gactatggtagaagatctgatgaaaggtcaaccagaagtcaac 22132052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 17417232 - 17417288
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    |||||||||||||||||||| ||||| || ||||||||| |||  ||||||||||||    
T  17417232 tggtagaagatctgaagaaatgtcaatcagaagtcaacacattagatcagaagaaaa 17417288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 17417345 - 17417424
Alignment:
Q  154 agaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatgtcaaatttgtcgtc 233  Q
    |||||||||||||| ||| |||||||||||| |||  | ||||| | || ||||||| |||||||||||  |||||||||    
T  17417345 agaagaccccatcagactcggaagaccttcatactgcaaaagcatttgaaggacccagactccatgtcagctttgtcgtc 17417424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 18922665 - 18922588
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcag-aagaaaatgacgtctcttagaagctga 96  Q
    ||||||| ||||||||||||||||||||| || |||||| |||  ||||| || ||||||| | |||| |||||||||    
T  18922665 tggtagatgatctgaagaaaggtcaaccagaaatcaacacattagatcagaaaaaaaatgatgcctctcagaagctga 18922588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 22268985 - 22268933
Alignment:
Q  21 ggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaa 74  Q
    |||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||    
T  22268985 ggtagaagatctgaagaaaggtaaaccagaagtcaac-ttttggatcagaagaa 22268933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23959674 - 23959637
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  23959674 tggtagaagatctgaagaaaggtcaactagaagtcaac 23959637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12668829 - 12669009
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||| | ||| |||||||||| |||||| |||||||||||||||| ||||||| || ||| |||||||||||| |||| |||| ||||||||||| |    
T  12668829 agagaagattaaaagactatggtacaagatccgaagaaaggtcaaccaaaagtcaatatcttggatcagaagaaaaggacgcctctcagaagctgaaggt 12668928  T
Q  101 ttgcttcattagactatgtggagatcatcagactcagacgacct-agcagacgcagaagaccccatcaaacttggaagacc 180  Q
    |  | |||| | ||| |||| ||| ||||||||| ||| ||||| |  |||| ||||||||||||||||||||||||||||    
T  12668929 taacctcatcatactctgtgaagaccatcagacttagaagacctcatgagactcagaagaccccatcaaacttggaagacc 12669009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 15650863 - 15651043
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||| ||| |||| ||||||||||| |||||| |||||||||| |||||||||| ||| |||| |||||||||||| |||| |||||||||||||    
T  15650863 agagaagcttaaaagactgtggtagaagatatgaagacaggtcaaccagaagtcaacatcttggatcaaaagaaaatgacgcctctcagaagctgaagat 15650962  T
Q  101 ttgcttcattagactatgtggagatcatcagactcagacgacct-agcagacgcagaagaccccatcaaacttggaagacc 180  Q
    |  | |||| ||||| |||| ||||||||| |||  || ||||| | || || || ||||||  |||||||||||||||||    
T  15650963 taacatcatcagactctgtgaagatcatcatacttggaagacctcatcaaactcataagaccttatcaaacttggaagacc 15651043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 15787540 - 15787674
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||  |||||||||| ||| || ||||||||||||||||||| |||||| ||||||    
T  15787540 agagaagcttaaaagaatatggtagaagatctgaagaaaggtcaaccgaaagtcaacatcttggattagaagaaaatgacgtctctcagaagccgaagat 15787639  T
Q  101 ttgcttcattagactatgtggagatcatcagactc 135  Q
       | ||||||||||   || ||||||||||||||    
T  15787640 caacctcattagactcgatgaagatcatcagactc 15787674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 37283079 - 37283176
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaaga 99  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||| |||| |||| ||||  ||||||||||| |||  |||||||||||||||||    
T  37283079 agagaagctcaaa-gacttaggtagaagatctgaagaaaggtcaaccagaagttaacacattggttcagaagaaaaggactcctcttagaagctgaaga 37283176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 30805658 - 30805717
Alignment:
Q  16 actatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||    
T  30805658 actatggtagaagatctgaagaaaggtcaaccagaagtgaacatcttggatcagaagaaa 30805717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22049647 - 22049589
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacat 59  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||| ||||||||    
T  22049647 agagaagctttaaagactatggtagaagatctgaagaaaggtcaaccatatgtcaacat 22049589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 31584166 - 31584218
Alignment:
Q  22 gtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaa 74  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||| |||||    
T  31584166 gtagaagatctgaagaaatgtcaaccataagtcaacattttggatcataagaa 31584218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 33439232 - 33439172
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||| ||||||||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  33439232 gactttggtagaagatctgatgaaaggtaaaccataagtcaacgtcttggatcagaagaaa 33439172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 19018897 - 19019002
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgcttcattagactatgt 119  Q
    |||||||| ||||||||||| |||||| | |||||||||| ||| |||||| ||||| |||| |||| ||||||||||||||  | |||| ||||| |||    
T  19018897 tggtagaaaatctgaagaaaagtcaac-agaagtcaacatcttggatcaga-gaaaaggacgcctctcagaagctgaagattaacctcatcagactttgt 19018994  T
Q  120 ggagatca 127  Q
    | ||||||    
T  19018995 gaagatca 19019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22638661 - 22638586
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    |||||| |||||| || ||| ||||||||||||||||||||||||||| |||| ||||  ||| || |||||||||    
T  22638661 agagaatctcaaaagaatattgtagaagatctgaagaaaggtcaaccagaagttaacaatttggattagaagaaaa 22638586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 17087905 - 17087940
Alignment:
Q  22 gtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17087905 gtagaagatctgaagaaaggtcaaccagaagtcaac 17087940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 26898352 - 26898283
Alignment:
Q  5 aagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||| ||| |||||||||||||||||  ||||||||| |||||||| |||||| |||  |||||||||||    
T  26898352 aagctaaaaagactatggtagaagatccaaagaaaggttaaccataa-tcaacacattagatcagaagaaa 26898283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 37283205 - 37283278
Alignment:
Q  149 gacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatgtca 222  Q
    |||| |||||||||||||| |||||||||| |||  ||||| |||||| |  |||||||||| |||||| ||||    
T  37283205 gacgtagaagaccccatcagacttggaagatcttttgacttcagaagctcctgagggacccagactccacgtca 37283278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12398064 - 12398008
Alignment:
Q  19 atggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||||||||||||| |||||||| |||| ||| | ||| || ||||||||    
T  12398064 atggtagaagatctgaagaaaagtcaaccagaagtaaacgtcttggattagaagaaa 12398008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 22975630 - 22975500
Alignment:
Q  3 agaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagattt 102  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||| |||| ||||||| |||| |||  ||||||| |||||||    
T  22975630 agaagctcaaaagactatggtaaaagatctgaagaaaggtcaaccagaagtgaacatattggatcaaaagaaaaggacgcctcacagaagctaaagattt 22975531  T
Q  103 gcttcattagactatgtggagatcatcagac 133  Q
    || | || ||||| | |||||||||||||||    
T  22975530 gccttatcagactctttggagatcatcagac 22975500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 7185400 - 7185532
Alignment:
Q  5 aagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgc 104  Q
    ||||| ||| ||||||||||||||||||||| ||| |||||||| |||||||||| ||| ||| ||||||||  ||| | || ||||||||||||||       
T  7185400 aagcttaaaagactatggtagaagatctgaa-aaatgtcaaccagaagtcaacatcttgtatcggaagaaaagaacgccactcagaagctgaagattaat 7185498  T
Q  105 ttcattagactatgtggagatcatcagactcaga 138  Q
     ||||  |||| |||| |||||||| ||||||||    
T  7185499 atcatctgactctgtgaagatcatctgactcaga 7185532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 1775390 - 1775513
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgcttcattagac 114  Q
    ||||||||||||| |||||||||||| ||||||| |||| || || ||| ||||||||||||  ||| |||| ||||||| |||| |    |||| ||||    
T  1775390 gactatggtagaaaatctgaagaaagatcaaccagaagttaatatgttggatcagaagaaaagaacgcctctcagaagctaaagaatatactcatcagac 1775489  T
Q  115 tatgtggagatcatcagactcaga 138  Q
    | |||| ||||||||| |||||||    
T  1775490 tctgtgaagatcatcatactcaga 1775513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10646598 - 10646652
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaa 56  Q
    ||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||    
T  10646598 agagaagctaaaa-gactatggtaaaagatctgaagaaatgtcaaccataagtcaa 10646652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32957911 - 32957837
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    ||||||||||||| ||||||||||  |||||||||||||||||| ||| |||| |||| |||| || |||||||||    
T  32957911 agagaagctcaaa-gactatggtattagatctgaagaaaggtcagccagaagttaacacattggatgagaagaaaa 32957837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 956867 - 956830
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  956867 tggtagaagatctgaagaaagatcaaccataagtcaac 956830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 8105960 - 8105919
Alignment:
Q  16 actatggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  8105960 actatggtagaatatctgaagaaaggtcaaccagaagtcaac 8105919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27707093 - 27707166
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||  | |||||||| | ||| |||| ||||||    
T  27707093 agagaaactcaaa-gactatggtagaagatctgaataaaggtcaagtagaagtcaacgtcttggatcaaaagaaa 27707166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8259664 - 8259627
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  8259664 tggtagaagatatgatgaaaggtcaaccataagtcaac 8259627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 16033488 - 16033448
Alignment:
Q  3 agaagctcaaacgactatggtagaagatctgaagaaaggtca 44  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  16033488 agaagctcaaa-gactatggtagaagatctgatgaaaggtca 16033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 1783309 - 1783249
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||  ||||||| |||||||||||| || ||||||| || ||| |||||||||||    
T  1783309 gactatggttaaagatctaaagaaaggtcaatcagaagtcaatatgttggatcagaagaaa 1783249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 26822633 - 26822573
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||| ||| |||||||||||||||||| |||| ||||  ||| |||| ||||||    
T  26822633 gactatggtaggagagctgaagaaaggtcaaccagaagtaaacaccttggatcaaaagaaa 26822573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 28252 - 28058
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatt 101  Q
    |||||| ||||| |||||| |||||||||||||||||||||| || | |||| |||||  || |||||||||||| |||  |||| ||||||  ||||||    
T  28252 gagaaggtcaaaagactattgtagaagatctgaagaaaggtccactagaagttaacattctggatcagaagaaaaggacacctctcagaagcaaaagatt 28153  T
Q  102 tgcttcattagactatgtggagatcatcagactcagacgacct-agcagacgcagaagaccccatcaaacttggaagaccttcagactttagaag 195  Q
     || |||||||||||||| |||||||||| ||||||| ||| | | || || | ||||   |||||| |||||||||||||| |||||| |||||    
T  28152 ggcatcattagactatgtagagatcatcaaactcagaagacttcatcaaactctgaaggtaccatcagacttggaagacctttagacttcagaag 28058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 27118413 - 27118546
Alignment:
Q  4 gaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttg 103  Q
    |||||| ||| | ||||| ||||| |||||||||||||||||||| |||| ||  | ||| ||||||||||||  |||||| ||||||| |||||||| |    
T  27118413 gaagcttaaaaggctatgctagaaaatctgaagaaaggtcaaccaaaagttaatgtcttggatcagaagaaaaa-acgtcttttagaagttgaagattag 27118511  T
Q  104 cttcattagactatgtggagatcatcagactcaga 138  Q
    | |||| ||||| ||||||||||||||||||||||    
T  27118512 cctcatcagactctgtggagatcatcagactcaga 27118546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 13303467 - 13303393
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    |||||||||||| | |||||||| ||||||||||||||||| ||||| || || |||||||| ||||||||||||    
T  13303467 gagaagctcaaaaggctatggtataagatctgaagaaaggtaaaccagaaatccacatattggatcagaagaaaa 13303393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24308669 - 24308742
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||  ||| |||| ||||||    
T  24308669 agagaagatcaaa-gactatggtagaagatctaaagaaaggtcaaccagaagtcaacaccttggatcaaaagaaa 24308742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23584701 - 23584774
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||| | |||||||    |||||||||||||||    
T  23584701 agagaaactcaaa-gactatggtagaagatctgaacaaaggtcaactagaagtcaatgccttgaatcagaagaaa 23584774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 25727337 - 25727388
Alignment:
Q  23 tagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||||||||||||||| || |||| ||||| || ||||||||||||    
T  25727337 tagaagatctgaagaaaggtcaatcagaagttaacat-tttaatcagaagaaa 25727388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 46349331 - 46349114
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagatttgcttcattagac 114  Q
    |||||||||||||||||||||||||| | ||| | ||||||| |||||  || ||||||||| ||||| ||| ||||||||||||||  | || | ||||    
T  46349331 gactatggtagaagatctgaagaaagataaactagaagtcaaaatattagattagaagaaaaagacgtttctcagaagctgaagattgacctcgtcagac 46349232  T
Q  115 tatgtggagatcatcagactcagacga-cctagcagacgca-gaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaa 212  Q
    ||| ||||||||||||||||  || || || | |||||  |  ||||||||||||  |||||||||||||||||||| | ||| ||  || ||||| | |    
T  46349231 tatatggagatcatcagactttgaagacccaaccagacttataaagaccccatcagtcttggaagaccttcagacttcataagaacctgaaggaccaaga 46349132  T
Q  213 ctccatgtcaaatttgtc 230  Q
     |||| ||||||||||||    
T  46349131 atccacgtcaaatttgtc 46349114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 27485788 - 27485878
Alignment:
Q  106 tcattagactatgtggagatcatcagactcagacgacctagc-agacgcagaagaccccatcaaacttggaagaccttcagactttagaag 195  Q
    |||||||||| ||| |||||||||||||||||| ||| |||| |||| | ||||||||||||| ||||| ||||||||||||||| |||||    
T  27485788 tcattagactctgtagagatcatcagactcagaagacttagccagacacggaagaccccatcagacttgaaagaccttcagacttcagaag 27485878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5554706 - 5554761
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  5554706 agagaagctcaaa-gactatggtagaagatctgaagaaaggtcaaccaaaagtcaac 5554761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 16198785 - 16198851
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcag 69  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  16198785 gagaagctcaaa-gactttggtagaagatatgaagaaaggtcaaccagaagtcaacatattggatcag 16198851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 17119333 - 17119273
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  ||| |||||||||||    
T  17119333 gactatggtagaagatctgaaggaaggtcaaccagaagtcaacaccttggatcagaagaaa 17119273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 38076156 - 38076240
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||  ||| |||||||| ||| || ||| || |||||||||||||    
T  38076156 gactatggtagaagatttgaagaaaggtcaaccagaagtcgacaccttggatcagaag-aaaggaagtcactcagaagctgaagat 38076240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 14332601 - 14332547
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  14332601 gagaagctaaaa-gactatggtagaagatctaaagaaaggtcaaccagaagtcaac 14332547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4514994 - 4514938
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    |||||||| |||| |||||||||||||||||| |||||| |||||||| |||||||||    
T  4514994 agagaagc-caaaagactatggtagaagatctaaagaaatgtcaaccagaagtcaaca 4514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 12393375 - 12393425
Alignment:
Q  26 aagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaa 76  Q
    ||||||||||||||||| | ||| |||||||||||||| |||| |||||||    
T  12393375 aagatctgaagaaaggttatccagaagtcaacatattgtatcataagaaaa 12393425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 17034278 - 17034312
Alignment:
Q  23 tagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    |||||||||||||||||||||||||| ||||||||    
T  17034278 tagaagatctgaagaaaggtcaaccaaaagtcaac 17034312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 27405759 - 27405796
Alignment:
Q  21 ggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    ||||||||||||||||||| || |||||||||||||||    
T  27405759 ggtagaagatctgaagaaaagttaaccataagtcaaca 27405796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 27485685 - 27485750
Alignment:
Q  34 aagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaaga 99  Q
    ||||||||||||||| |||||||| ||||| |||||||  ||| |||||| || ||||||| ||||    
T  27485685 aagaaaggtcaaccaaaagtcaacttattggatcagaaagaaaagacgtcactcagaagctaaaga 27485750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 4767495 - 4767547
Alignment:
Q  23 tagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||| ||||||||||||||| |||||||||  ||  |||||||||||    
T  4767495 tagaagatctaaagaaaggtcaaccagaagtcaacaccttagatcagaagaaa 4767547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14252307 - 14252264
Alignment:
Q  2 gagaagctcaaacgactatggtagaagatctgaagaaaggtcaac 46  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||    
T  14252307 gagaagctaaaa-gactatggtagaagatctaaagaaaggtcaac 14252264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 14272087 - 14271970
Alignment:
Q  117 tgtggagatcatcagactcagacgacctagcag-acgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactc 215  Q
    |||||| ||||||||||||||| |  ||| ||| || ||||||||||||| | ||||||||||||||||||||  ||||||||| |||||||| | ||||    
T  14272087 tgtggaaatcatcagactcagaagtactaccaggacacagaagaccccattagacttggaagaccttcagactccagaagcacttgagggacctagactc 14271988  T
Q  216 catgtcaaatttgtcgtc 233  Q
    |||||||  |||||||||    
T  14271987 catgtcagctttgtcgtc 14271970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10821419 - 10821283
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    |||||||||  || || ||||||||||||  |||||||| || ||| |||||||||||||||| |||||||| |||||| |||||| | ||| |||||||    
T  10821419 agagaagctttaaagattatggtagaagacttgaagaaaagttaactataagtcaacatattggatcagaag-aaatgatgtctctcaaaagttgaagat 10821321  T
Q  101 ttgcttcattagactatgtggagatcatcagactcaga 138  Q
    |  | | || | ||| |||| |||||||||||||||||    
T  10821320 tgacctaatcaaactctgtgaagatcatcagactcaga 10821283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 4312697 - 4312638
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaa 74  Q
    ||||||||||||||||||||||||||||||| || |||||||||  ||| ||||||||||    
T  4312697 gactatggtagaagatctgaagaaaggtcaatcaaaagtcaacaccttggatcagaagaa 4312638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17291841 - 17291770
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaaga 73  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||||| | |||||||||| |||||||| ||||    
T  17291841 agagaagctaaaaagact-tggtagaagatttgaagaaaggtcaactagaagtcaacatgttgaatcaaaaga 17291770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 18615125 - 18615179
Alignment:
Q  163 catcaaacttggaagaccttcagactttagaagcactcgagggacccaaactcca 217  Q
    ||||| ||||||||||||||||||||||||||| |   |||||||||||||||||    
T  18615125 catcagacttggaagaccttcagactttagaagaagctgagggacccaaactcca 18615179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22562503 - 22562572
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaa 71  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |  |||||||| | ||| |||||||    
T  22562503 agagaagctcaaa-gactatggtagaagatctgaagaatggtcaaaccgaagtcaacttcttggatcagaa 22562572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 24492203 - 24492303
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaagat 100  Q
    ||||||||| ||| | |||| |||||||| || |||||||||| |||| |||||||||| ||| |||||||||||| |||||| || ||||| |||||||    
T  24492203 agagaagcttaaatggctatagtagaagacctaaagaaaggtcgaccagaagtcaacatcttggatcagaagaaaaagacgtccctcagaagttgaagat 24492302  T
Q  101 t 101  Q
    |    
T  24492303 t 24492303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30608010 - 30608084
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| |||||||||| | | |||||||||||    
T  30608010 agagaagcttaaaagactatagtagaagatatgaagaaaggtcaaccagaagtcaacatctaggatcagaagaaa 30608084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 6998768 - 6998885
Alignment:
Q  117 tgtggagatcatcagactcagacgacctagca-gacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactc 215  Q
    |||||||||||||||||||||| ||||||||| ||| || ||||| || ||| |||||||||| ||||| |||| ||||||||  |||||||  | ||||    
T  6998768 tgtggagatcatcagactcagaagacctagcaggacacataagacaccttcagacttggaagatcttcaaacttcagaagcacctgagggacttagactc 6998867  T
Q  216 catgtcaaatttgtcgtc 233  Q
    || ||||| ||| |||||    
T  6998868 cacgtcaactttatcgtc 6998885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24838111 - 24838166
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaac 57  Q
    ||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||    
T  24838111 agagaagctcaaa-gactatggtagaagatatgaagaaaggtcaagcagaagtcaac 24838166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 25604630 - 25604554
Alignment:
Q  23 tagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaaatgacgtctcttagaagctgaaga 99  Q
    |||||||| |||||||||||||| || ||||||||| |||| |||| ||||||| |||  |||| ||||||| ||||    
T  25604630 tagaagatatgaagaaaggtcaatcagaagtcaacacattggatcataagaaaaggacacctctcagaagctaaaga 25604554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26014089 - 26014016
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||| |||||| ||||||| |||| |||||||||||| |||||||| |||||||||  ||  |||||||||||    
T  26014089 agagaatctcaaa-gactatgatagatgatctgaagaaatgtcaaccaaaagtcaacaccttagatcagaagaaa 26014016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 19555159 - 19555270
Alignment:
Q  106 tcattagactatgtggagatcatcagactcagacgacctag-cagacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagg 204  Q
    |||| |||||||||||||||||||| ||||||| ||||| | |||||||| |||| ||| ||| |||||||||||||||||| || | ||||||  ||||    
T  19555159 tcatcagactatgtggagatcatcaaactcagaagaccttgccagacgca-aagatcccttcagacttggaagaccttcagatttcaaaagcaccagagg 19555257  T
Q  205 gacccaaactcca 217  Q
    |||||| ||||||    
T  19555258 gacccagactcca 19555270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11420045 - 11419991
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaa 56  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  11420045 agagaagctcaaa-gactatggtagaagatctgaagaaaggtcaaccagaagtcaa 11419991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 22222557 - 22222666
Alignment:
Q  121 gagatcatcagactcagacgacctagc-agacgcagaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatg 219  Q
    |||||||||||||||||| |||||||| | || ||||||| ||||||| |||| |||||||||||||||| | |||||   ||||||| || |||||| |    
T  22222557 gagatcatcagactcagaagacctagccaaactcagaagaacccatcagacttagaagaccttcagacttcataagcatatgagggactcagactccacg 22222656  T
Q  220 tcaaatttgt 229  Q
    ||| ||||||    
T  22222657 tcagatttgt 22222666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17473875 - 17473931
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    |||||| |||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  17473875 agagaaactcaaa-gactatggtagaagatttgaagaaaggtcaaccaaaagtcaaca 17473931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 47575939 - 47575883
Alignment:
Q  19 atggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||||||||||||||| ||| |||| | ||| |||||||||||    
T  47575939 atggtagaagatctgaagaaaggtcaaccagaagacaacgtcttggatcagaagaaa 47575883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 18446153 - 18446074
Alignment:
Q  154 agaagaccccatcaaacttggaagaccttcagactttagaagcactcgagggacccaaactccatgtcaaatttgtcgtc 233  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| ||  ||||||||||   |||| |||| ||||||||||    
T  18446153 agaagaccccatcagacttggaagactttcagacttcagaagaacctgagggacccaggatccacgtcagatttgtcgtc 18446074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21821900 - 21821973
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||| || ||||||||||||| || ||||||||||||||||| ||||||||   ||| |||||||||||    
T  21821900 agagaagctcgaa-gactatggtagaaaatatgaagaaaggtcaaccagaagtcaacgacttggatcagaagaaa 21821973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21588085 - 21588142
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    ||||||||||||| |||| |||||||||||||  |||||||||||||| ||| |||||    
T  21588085 agagaagctcaaaagactttggtagaagatctagagaaaggtcaaccaaaagccaaca 21588142  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 11545514 - 11545454
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||| ||||||||| || || |||||||||  ||| |||||||||||    
T  11545514 gactatggtagaagatctcaagaaaggttaatcagaagtcaacaccttggatcagaagaaa 11545454  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 18446283 - 18446239
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacat 59  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||    
T  18446283 gactatggtagaagatatgaaaaaaggtcaaccagaagtcaacat 18446239  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 21809754 - 21809825
Alignment:
Q  3 agaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||  | ||||||  |||| |||||||||||    
T  21809754 agaagctcaaa-gactatggtagaaaatctgaagaaaggtcatccggacgtcaacgcattggatcagaagaaa 21809825  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8912000 - 8911945
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaa 56  Q
    ||||||||| | | ||| |||||||||||||| ||||||||||||||| |||||||    
T  8912000 agagaagcttagaagacaatggtagaagatctaaagaaaggtcaaccagaagtcaa 8911945  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 20896907 - 20896961
Alignment:
Q  3 agaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    ||||||||||| |||||||||||||||||| ||||||| | ||||| |||||||||    
T  20896907 agaagctcaaa-gactatggtagaagatctaaagaaagtttaaccagaagtcaaca 20896961  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 15736971 - 15736938
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagt 53  Q
    ||||||||||| ||||||||||||||||||||||    
T  15736971 tggtagaagatttgaagaaaggtcaaccataagt 15736938  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 11449240 - 11449300
Alignment:
Q  15 gactatggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||||||||||||| ||||||||| || || |||||||||  ||  |||||||||||    
T  11449240 gactatggtagaagatctcaagaaaggttaatcagaagtcaacaccttagatcagaagaaa 11449300  T

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Target: scaffold0650 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6254 - 6198
Alignment:
Q  1 agagaagctcaaacgactatggtagaagatctgaagaaaggtcaaccataagtcaaca 58  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  6254 agagaagctcaaa-gactatggtagaagatctgatgaaaggtcaaccagaagtcaaca 6198  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 319203 - 319257
Alignment:
Q  20 tggtagaagatctgaagaaaggtcaaccataagtcaacatattgaatcagaagaaa 75  Q
    |||||||| |||||||||||||||||||| |||||||| | ||| |||||||||||    
T  319203 tggtagaacatctgaagaaaggtcaaccagaagtcaac-ttttggatcagaagaaa 319257  T

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