View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_35 (Length: 219)
Name: NF11217_low_35
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 35213459 - 35213644
Alignment:
| Q |
18 |
aaatgtagttggcatttggcaattttttaagggtttccaactgactcaaccttcatttttaacacatttctcnnnnnnnactcctaaagaaattctagca |
117 |
Q |
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| T |
35213459 |
aaatgtagttggcatttggcaattttttaagggtttccaactgactcaaccttcattttttacacatttctctttttttactcctaaagaaattctagca |
35213558 |
T |
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| Q |
118 |
tctctagcaattttcctttcctagtttcaaatggactggtaaaagctgagaagcttactaccttgctagtagtacattcaacttct |
203 |
Q |
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| T |
35213559 |
tctctagcaattttcctttcctagtttcaaatggactggtaaaagctgagaagcttactaccttgctagtagtacattcaacttct |
35213644 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 636888 - 636834
Alignment:
| Q |
145 |
caaatggactggtaaaagctgagaagcttactaccttgctagtagtacattcaac |
199 |
Q |
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| T |
636888 |
caaatggacgggtataagttgagaatcttactaccttgcaggtagtacattcaac |
636834 |
T |
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