View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_4 (Length: 656)

Name: NF11217_low_4
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_4
NF11217_low_4
[»] chr3 (21 HSPs)
chr3 (1-395)||(7750428-7750828)
chr3 (236-639)||(6259339-6259748)
chr3 (272-639)||(13270093-13270445)
chr3 (202-393)||(6266122-6266319)
chr3 (202-340)||(6245771-6245915)
chr3 (272-408)||(6721568-6721704)
chr3 (202-395)||(6590757-6590956)
chr3 (272-395)||(6900517-6900640)
chr3 (541-639)||(6169031-6169129)
chr3 (202-340)||(6169375-6169519)
chr3 (517-639)||(6245427-6245549)
chr3 (272-381)||(6142726-6142835)
chr3 (272-393)||(6882935-6883056)
chr3 (295-395)||(8568476-8568576)
chr3 (295-395)||(8455055-8455155)
chr3 (272-395)||(5250570-5250693)
chr3 (272-395)||(6448287-6448410)
chr3 (202-255)||(6917679-6917732)
chr3 (1-44)||(6590652-6590695)
chr3 (531-629)||(6917251-6917349)
chr3 (274-395)||(8471962-8472083)
[»] chr1 (1 HSPs)
chr1 (272-573)||(35139893-35140192)
[»] chr7 (1 HSPs)
chr7 (272-380)||(6572803-6572911)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 7750828 - 7750428
Alignment:
Q  1 aacctagagtttcttgctgatcaaaaggatagattggcacttaacaaatttactagtggtgaatgtgaaattggagtcttgaaattgttaagagaattta 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7750828 aacctagagtttcttgctgatcaaaaggatagattgggacttaacaaatttactagtggtgattgtgaaattggagtcttgaaattgttaagagaattta 7750729  T
Q  101 gagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagtcatcccccggatattaccaactgcacctttgatggataaatctgcggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7750728 gagctgtatcgaaaagttgtaatgacatatttgttggtaaagatggtagagtcatcccccggatattaccaactgcacctttgatggataaatctgcggt 7750629  T
Q  201 gtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttac-----aacc-ggctatctgtaatcagtatagtgggtctgaag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    || |  ||||||||||||||||| |||      
T  7750628 gtatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttacagtgaaacctttgtacccataatcagtatagtgggtgtgatt 7750529  T
Q  295 gggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttctgaatcttttg 394  Q
    ||||||||||||||| || ||||||  ||||||||||| ||||||| |||||| ||||| |||||| ||| | | |||||| ||||||| ||||||||||    
T  7750528 gggatgggtaagacaaccattgcccgacttgtttacaacgaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtttcagaatcttttg 7750429  T
Q  395 a 395  Q
    |    
T  7750428 a 7750428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 236 - 639
Target Start/End: Complemental strand, 6259748 - 6259339
Alignment:
Q  236 aatttttactttcagacagttacaaccg------gctatctgtaatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgttta 329  Q
    ||||||||||||||||||||||||||||      | ||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6259748 aatttttactttcagacagttacaaccgaaaccaggtatccataatcagtatagtgggtctgacggggatgggtaagacagcccttgcccagcttgttta 6259649  T
Q  330 caatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttc---tgaatcttttgactgtcttcgtctcatgaaagaaatacgcgat 426  Q
    ||||||||| ||||||||||||||||||||||||| | | ||||||||||||||   |||||||||||| |||||||||||||  |||||||||| | ||    
T  6259648 caatgaccataggatacaggagcagtttgaatttaaagcttgggtccatgtttctgatgaatcttttgattgtcttcgtctcaacaaagaaatactcaat 6259549  T
Q  427 cttcaaccgcaacattggcaagcagggagtgaatatttacttgttctggatgatgtctgtattaaaaatagttattatatgtcggagtatttactacctc 526  Q
    | ||||| |||| | |||| |||||||| | |||||||||||||||| ||||||| ||| |||||||||||     |||||| ||||  |||||||| ||    
T  6259548 catcaactgcaaaaatggctagcagggaataaatatttacttgttctagatgatgcctggattaaaaatag---gaatatgttggagcgtttactacttc 6259452  T
Q  527 tttgtaaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggca 626  Q
    ||| |||||||||||   |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| || |||||||    
T  6259451 tttttaaccagggatacattcgaggcaaaatgattgtgacgacaaatgataaagaagtagcatcagtcatgagatccacccggataattcatctaaggca 6259352  T
Q  627 attggagaagagt 639  Q
    ||||||| |||||    
T  6259351 attggaggagagt 6259339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 272 - 639
Target Start/End: Original strand, 13270093 - 13270445
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | | ||    
T  13270093 taatcagtatagtgggtctgatggggatgggtaagacagcccttgctcagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttg 13270192  T
Q  372 ggtccatgtttctgaatcttttgactgtcttcgtctcatgaaagaaatacgcgatcttcaaccgcaacattggcaagcagggagtgaatatttacttgtt 471  Q
    |||| ||||| | ||||||||||   |||||| |||||  |||||||||    || ||||||  ||||| | |  |||| ||  | | ||||||||||||    
T  13270193 ggtctatgttccagaatcttttggtcgtcttcatctcaacaaagaaataattaatattcaactccaacacttggtagcacgggataattatttacttgtt 13270292  T
Q  472 ctggatgatgtctgtattaaaaatagttattatatgtcggagtatttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaa 571  Q
    || ||||||| ||| || ||| ||||     |||||| |||||||||||||| | ||             |||||||||| ||||| || |||||||||     
T  13270293 ctagatgatgcctggatcaaagatag---gaatatgttggagtatttactacatttt------------acttttcgaggtaagattatcgtgacgacac 13270377  T
Q  572 atgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagt 639  Q
    ||||||| | ||||||||||||||||||||| | || ||||||| ||||||||||||||||| |||||    
T  13270378 atgataatgaagtagcatcagtcatgagatccaaccggataattcatttaaggcaattggaggagagt 13270445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 202 - 393
Target Start/End: Complemental strand, 6266319 - 6266122
Alignment:
Q  202 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttac------aaccggctatctgtaatcagtatagtgggtctgaagg 295  Q
    |||||||| |||||||||  ||||||||||| ||| |||||||||||||| ||| ||      |||| |||| |  ||||||||||||||||||||| ||    
T  6266319 tatggtagagagcatgagcaagaggaaatgattgattttttactttcagatagtcacggtgagaaccagctacccataatcagtatagtgggtctgacgg 6266220  T
Q  296 ggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttctgaatctttt 393  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||| ||| |||||    
T  6266219 ggattggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttgggtccatgtttcagaaactttt 6266122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 6245915 - 6245771
Alignment:
Q  202 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagt------tacaaccggctatctgtaatcagtatagtgggtctgaagg 295  Q
    |||||||| |||||||||| ||| ||||| | ||||||||||||||||||||||      ||||||||| ||||  |||||||||||||||||||| | |    
T  6245915 tatggtagagagcatgagaaagaagaaataattgaatttttactttcagacagtcacggttacaaccgggtatccataatcagtatagtgggtctggacg 6245816  T
Q  296 ggatgggtaagacagcccttgcccagcttgtttacaatgaccaca 340  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  6245815 ggataggtaagacaacccttgcgcagcttgtttacaatgaccaca 6245771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 272 - 408
Target Start/End: Original strand, 6721568 - 6721704
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    |||||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||  |||||| | |||| ||| | | ||    
T  6721568 taatcagtatagtgggtctgattgggataggtaagacaacccttgcccagcttgtttacaatgaccacaggatagtggagcaatatgaacttaaagcttg 6721667  T
Q  372 ggtccatgtttctgaatcttttgactgtcttcgtctc 408  Q
    |||| || |||| |||||||||||   ||||||||||    
T  6721668 ggtctatctttcagaatcttttgatgttcttcgtctc 6721704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 6590757 - 6590956
Alignment:
Q  202 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttaca------accggctatctgtaatcagtatagtgggtctgaagg 295  Q
    |||||||| |||||||||| ||||||||| | | |||||||||||||||||||| |||      |||   || |  ||||| ||||||||||| |||  |    
T  6590757 tatggtagagagcatgagaaagaggaaataattaaatttttactttcagacagtcacagtcacaaccatgtacccataatctgtatagtgggtatgattg 6590856  T
Q  296 ggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttctgaatcttttga 395  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||| |||||| ||| | | |||||| |||||||  ||||||||||    
T  6590857 ggatgggtaagacaacccttgcccggcttgtttacaaggaccacaagatactggagcaatttgaacttaaagcttgggtctatgtttcaaaatcttttga 6590956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 395
Target Start/End: Complemental strand, 6900640 - 6900517
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    |||||||| |||||||| |||  ||||||||||||||| |||| ||||||||||||||| ||||| ||| |||   |||||| |||||| ||| | | ||    
T  6900640 taatcagtgtagtgggtgtgattgggatgggtaagacaaccctcgcccagcttgtttactatgacgacatgatcgtggagcattttgaaattaaagcttg 6900541  T
Q  372 ggtccatgtttctgaatcttttga 395  Q
    |||||||||||| |||||||||||    
T  6900540 ggtccatgtttcggaatcttttga 6900517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 541 - 639
Target Start/End: Complemental strand, 6169129 - 6169031
Alignment:
Q  541 tcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaattggagaagagt 639  Q
    ||||||||||| | ||| || ||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||| || ||||||||||||||||| |||||    
T  6169129 tcttttcgagggaggatgatagtgacaacacatgataaagaagttgcatcagtcatgagatccacccagatacttcatttaaggcaattggaggagagt 6169031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 6169519 - 6169375
Alignment:
Q  202 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagttac------aaccggctatctgtaatcagtatagtgggtctgaagg 295  Q
    |||||||| |||||||||| ||| ||||| | ||| |||||||||||| ||||| ||      |||||| || |  |||||||||| ||||||||||| |    
T  6169519 tatggtagagagcatgagaaagaagaaataattgattttttactttcatacagtcacggtgacaaccgggtacccataatcagtatcgtgggtctgaacg 6169420  T
Q  296 ggatgggtaagacagcccttgcccagcttgtttacaatgaccaca 340  Q
    |||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  6169419 ggataggtaagacaacccttgcgcagcttgtttataatgaccaca 6169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 639
Target Start/End: Complemental strand, 6245549 - 6245427
Alignment:
Q  517 ttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataattt 616  Q
    ||||||| | ||| |||||||| | ||| |||||| | ||| || ||||| ||| ||||||||| ||| ||||||||||||||||  ||||||||| ||     
T  6245549 ttactacttatttttaaccaggaaccttctcgagggaggatgatagtgacaacacatgataaagaagttgcatcagtcatgagatacacccagatacttc 6245450  T
Q  617 atttaaggcaattggagaagagt 639  Q
    ||||||||||||||||| |||||    
T  6245449 atttaaggcaattggaggagagt 6245427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 6142835 - 6142726
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    ||||||||||||| |||||    ||||| ||||||||| ||||||| ||| || |||||||||||||||||||||||||||| |||||| |||   | ||    
T  6142835 taatcagtatagtaggtcttcctgggataggtaagacaacccttgcgcagtttatttacaatgaccacaggatacaggagcaatttgaacttaatgcttg 6142736  T
Q  372 ggtccatgtt 381  Q
    ||||||||||    
T  6142735 ggtccatgtt 6142726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 6883056 - 6882935
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    |||| |||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||| ||| |||   |||||| |||||| ||| | | ||    
T  6883056 taattagtatagtgggtctgatggggatgggtaagacaactctcgcccagcttgtttacaatgacgacatgatcacggagcattttgaacttaaagcttg 6882957  T
Q  372 ggtccatgtttctgaatctttt 393  Q
    |||  ||||| | |||||||||    
T  6882956 ggtgaatgttccagaatctttt 6882935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 8568476 - 8568576
Alignment:
Q  295 gggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttctgaatcttttg 394  Q
    ||||||||||||||  ||||||| |  ||||| ||||||||||||| |||| || |||| |||||| ||| | | |||||||||||||| ||||||||||    
T  8568476 gggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtccatgtttcagaatcttttg 8568575  T
Q  395 a 395  Q
    |    
T  8568576 a 8568576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 8455155 - 8455055
Alignment:
Q  295 gggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctgggtccatgtttctgaatcttttg 394  Q
    ||||||||||| ||  |||||||  ||||||| ||||||||| ||| |||| ||||||| |||||| ||| | | |||||| ||||||| ||||||||||    
T  8455155 gggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaagcatgggtctatgtttcagaatcttttg 8455056  T
Q  395 a 395  Q
    |    
T  8455055 a 8455055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 395
Target Start/End: Complemental strand, 5250693 - 5250570
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    ||||||| |||||||||||    || |||||||||||  | ||||| |||||||  ||||| ||||||||||| |||||||| |||||| ||| | | ||    
T  5250693 taatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaacttaaagcttg 5250594  T
Q  372 ggtccatgtttctgaatcttttga 395  Q
    |||| ||||||| ||| |||||||    
T  5250593 ggtctatgtttcagaaacttttga 5250570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 6448287 - 6448410
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    ||||||| ||||||||||||   ||||||||||||||  |  ||||  ||||||| |||||| || ||| |||| ||||||| |||||| ||| ||| ||    
T  6448287 taatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatcttg 6448386  T
Q  372 ggtccatgtttctgaatcttttga 395  Q
    |||| ||||||| |||| ||||||    
T  6448387 ggtctatgtttcagaatattttga 6448410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 6917732 - 6917679
Alignment:
Q  202 tatggtagggagcatgagatagaggaaatgactgaatttttactttcagacagt 255  Q
    |||||||| |||||||||| ||||||||| | |||||||||||| |||||||||    
T  6917732 tatggtagagagcatgagaaagaggaaataattgaatttttactatcagacagt 6917679  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6590652 - 6590695
Alignment:
Q  1 aacctagagtttcttgctgatcaaaaggatagattggcacttaa 44  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  6590652 aacctagagtttcttgcagatcaaaaggataaattgggacttaa 6590695  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 629
Target Start/End: Complemental strand, 6917349 - 6917251
Alignment:
Q  531 taaccagggatcttttcgaggcaagataattgtgacgacaaatgataaagcagtagcatcagtcatgagatcgacccagataatttatttaaggcaatt 629  Q
    |||||| ||||||| || ||||||||||||  |||| ||| |||| || | |||||||||| |||||||||| |||| | || || |||||| ||||||    
T  6917349 taaccatggatcttctcaaggcaagataatcttgacaacatatgacaaggaagtagcatcaatcatgagatccacccggctacttgatttaaagcaatt 6917251  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 8472083 - 8471962
Alignment:
Q  274 atcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctggg 373  Q
    ||||| ||||||||| ||   |||||||| |||||  ||||||| |||||||| ||||||||||| |||||  |  ||||||||||| ||| |   ||||    
T  8472083 atcagcatagtgggtttgcctgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggacaagcagtttgaacttaaagtttggg 8471984  T
Q  374 tccatgtttctgaatcttttga 395  Q
    ||||||| ||||| | ||||||    
T  8471983 tccatgtatctgagtattttga 8471962  T

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Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 272 - 573
Target Start/End: Original strand, 35139893 - 35140192
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    |||||||||| |||||||||| ||||| |||||||||| ||||  |||| ||||||||||||||||| |||||||| |||||||||||||||| | | ||    
T  35139893 taatcagtattgtgggtctgatggggaagggtaagacaaccctaacccaacttgtttacaatgaccataggatacatgagcagtttgaatttaaagcttg 35139992  T
Q  372 ggtccatgtttctgaatcttttgactgtcttcgtctcatgaaagaaatacgcgatcttcaaccgcaacattggcaagcagggagtgaatatttacttgtt 471  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||| | ||| ||||| |||||| |||| |||||||| | ||||||||||||||    
T  35139993 ggtccatgtttctgaatcttttgattgtcttcgtctcatccaagaaatactctatcatcaactgcaacactggctagcagggaataaatatttacttgtt 35140092  T
Q  472 ctggatgatgtctgtattaaaaatagttattatatgtcggagtatttactacctctttgtaaccagggatcttttcgaggcaagataattgtgacgacaa 571  Q
    || |||||||  || || ||||||||  | ||| | | |||| ||||||||| | ||| |||||||||||||||| |||||||||| || |||| |||||    
T  35140093 ctagatgatgcttggatcaaaaatag-gaatatgt-ttggagcatttactacttttttttaaccagggatctttttgaggcaagatgatcgtgatgacaa 35140190  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 380
Target Start/End: Original strand, 6572803 - 6572911
Alignment:
Q  272 taatcagtatagtgggtctgaaggggatgggtaagacagcccttgcccagcttgtttacaatgaccacaggatacaggagcagtttgaatttagatcctg 371  Q
    ||||||| ||||||||| ||   |||||||| |||||  ||||||| |||||||| ||||||||||| |||||  || | ||||||||  ||| | | ||    
T  6572803 taatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggagaaacagtttgaccttaaagcttg 6572902  T
Q  372 ggtccatgt 380  Q
    |||||||||    
T  6572903 ggtccatgt 6572911  T

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