View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11217_low_5 (Length: 584)

Name: NF11217_low_5
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11217_low_5
NF11217_low_5
[»] chr4 (16 HSPs)
chr4 (212-560)||(50551482-50551819)
chr4 (212-278)||(54316059-54316125)
chr4 (212-279)||(7061976-7062043)
chr4 (218-273)||(24673957-24674012)
chr4 (212-273)||(17914978-17915039)
chr4 (212-279)||(9551455-9551522)
chr4 (216-278)||(3556371-3556433)
chr4 (212-273)||(50544266-50544327)
chr4 (212-268)||(21785928-21785984)
chr4 (212-279)||(5465857-5465924)
chr4 (212-254)||(5466079-5466121)
chr4 (212-254)||(4402063-4402106)
chr4 (212-279)||(11789863-11789930)
chr4 (212-279)||(23655298-23655365)
chr4 (212-270)||(42475889-42475947)
chr4 (226-279)||(35256146-35256199)
[»] chr8 (12 HSPs)
chr8 (212-279)||(43801474-43801541)
chr8 (212-273)||(6911039-6911100)
chr8 (212-279)||(15009088-15009155)
chr8 (212-273)||(14999181-14999242)
chr8 (215-279)||(16324848-16324912)
chr8 (212-279)||(43801701-43801768)
chr8 (212-273)||(8489383-8489444)
chr8 (216-273)||(16325080-16325137)
chr8 (212-255)||(6911259-6911302)
chr8 (216-267)||(41722061-41722112)
chr8 (212-266)||(22781072-22781126)
chr8 (215-273)||(41403993-41404051)
[»] chr7 (12 HSPs)
chr7 (212-273)||(35207405-35207466)
chr7 (215-273)||(19318157-19318215)
chr7 (212-269)||(35207192-35207249)
chr7 (216-272)||(29474646-29474702)
chr7 (215-273)||(39983870-39983928)
chr7 (215-279)||(19318452-19318516)
chr7 (215-279)||(25048257-25048321)
chr7 (212-278)||(6408484-6408551)
chr7 (212-279)||(19318378-19318445)
chr7 (212-279)||(35363322-35363389)
chr7 (212-279)||(3740647-3740714)
chr7 (212-273)||(2834429-2834490)
[»] chr5 (8 HSPs)
chr5 (212-279)||(17370071-17370138)
chr5 (212-273)||(14076899-14076960)
chr5 (212-279)||(31193969-31194036)
chr5 (212-279)||(31194195-31194262)
chr5 (212-279)||(8754662-8754729)
chr5 (212-271)||(36955524-36955583)
chr5 (215-273)||(32347130-32347188)
chr5 (215-271)||(36955315-36955371)
[»] chr2 (14 HSPs)
chr2 (212-279)||(4371458-4371525)
chr2 (212-279)||(22563214-22563281)
chr2 (212-279)||(22563440-22563507)
chr2 (212-273)||(12232573-12232634)
chr2 (215-279)||(29893030-29893094)
chr2 (212-279)||(17200082-17200149)
chr2 (212-273)||(21265573-21265634)
chr2 (212-269)||(34645776-34645833)
chr2 (212-279)||(34645551-34645618)
chr2 (212-269)||(17200308-17200364)
chr2 (212-273)||(20296646-20296707)
chr2 (212-273)||(21265792-21265853)
chr2 (212-273)||(20296272-20296333)
chr2 (214-250)||(4682789-4682825)
[»] chr3 (11 HSPs)
chr3 (214-279)||(38500053-38500118)
chr3 (212-279)||(4041413-4041480)
chr3 (212-279)||(8799321-8799388)
chr3 (212-279)||(38499823-38499890)
chr3 (212-278)||(53197213-53197279)
chr3 (212-273)||(43797362-43797423)
chr3 (215-273)||(43797585-43797643)
chr3 (212-246)||(46883452-46883486)
chr3 (212-250)||(46883642-46883680)
chr3 (212-273)||(29828911-29828972)
chr3 (212-252)||(43797871-43797911)
[»] chr1 (16 HSPs)
chr1 (212-279)||(24882975-24883042)
chr1 (212-279)||(33400859-33400926)
chr1 (214-279)||(3385543-3385608)
chr1 (212-273)||(33156684-33156745)
chr1 (212-279)||(24883198-24883265)
chr1 (212-279)||(27171803-27171870)
chr1 (215-282)||(49777056-49777123)
chr1 (218-279)||(33156460-33156520)
chr1 (214-279)||(49776823-49776888)
chr1 (212-279)||(3385312-3385379)
chr1 (212-273)||(5771918-5771979)
chr1 (214-279)||(34969989-34970054)
chr1 (212-279)||(34622555-34622622)
chr1 (212-245)||(13946960-13946993)
chr1 (212-273)||(33401086-33401147)
chr1 (214-250)||(13947154-13947190)
[»] chr6 (3 HSPs)
chr6 (212-279)||(16125526-16125593)
chr6 (212-279)||(22748592-22748659)
chr6 (214-273)||(22748820-22748879)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 212 - 560
Target Start/End: Original strand, 50551482 - 50551819
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccgactccaatacgccaacccaaaaatagtcatagc 311  Q
    |||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  50551482 tgccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcataccccactccaatgcgccaacccaaaaatagtcatagc 50551581  T
Q  312 tgaacaacaggagaaagaaataaagta--gaatcaaccggagtacaatacgttcaatcacatatggttcctaacccaaccacaccctataccctccatgg 409  Q
    |||||||| || |||||||  ||||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         
T  50551582 tgaacaactggggaaagaagcaaagtagggaatcaactggagtacaatatgttcaatcacatatggttcctaacccaaccacaccctataccctc----- 50551676  T
Q  410 atacaatcaccnnnnnnnttatacaaacaatgta-gattttgatgacctattttcaaatttaattcccaannnnnnnaaaatgattgaacttttccccat 508  Q
    | | | ||||          |||||||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||    
T  50551677 acaaagtcac---------aatacaaacaatgtacgattttgatgacctattttcaaatttaattcccaatttttttaaaatgattgaacttttctccat 50551767  T
Q  509 acattttgaggctgaattttagggaagctttaagttataccgtatgaaggaa 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50551768 acattttgaggctgaattttagggaagctttaagttataccgtatgaaggaa 50551819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 54316059 - 54316125
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 278  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  54316059 tgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccg 54316125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 7062043 - 7061976
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||||||||  |||||||||||||||||| |||||||||||||||||| |||||    
T  7062043 tgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccga 7061976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 24673957 - 24674012
Alignment:
Q  218 atgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcat 24674012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 17914978 - 17915039
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| |||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  17914978 tgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcat 17915039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 9551455 - 9551522
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||| ||||||| ||||||| | ||||||||||||||| |||||||| ||||||||||||| |||||    
T  9551455 tgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccga 9551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 3556433 - 3556371
Alignment:
Q  216 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 278  Q
    ||||||||| |||||||||  ||||||||||||||  |||||||| |||||||||||||||||    
T  3556433 acatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgcccg 3556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 50544327 - 50544266
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| |||||| || ||||| ||| ||||||||||||||||||    
T  50544327 tgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcat 50544266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 21785928 - 21785984
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgg 268  Q
    ||||||||||  | ||||||||||||||||||||||||| ||| |||||||||||||    
T  21785928 tgccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaatgg 21785984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 5465924 - 5465857
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||||||||||| |||| ||||||| |||||||  |  |||||||||||||||||| |||||    
T  5465924 tgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccga 5465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 5466079 - 5466121
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagag 254  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  5466079 tgccacatgtcttacatccaaaccctaaatagagtaaatagag 5466121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 4402106 - 4402063
Alignment:
Q  212 tgccacatgtcttacatccaaact-ctaaatggagtaaatagag 254  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  4402106 tgccacatgtcttacatccaaactcctaaatggattaaatagag 4402063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 11789930 - 11789863
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||| |||| |||| |||| |||||||||||||||  || || ||||||||||||||| |||||    
T  11789930 tgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccga 11789863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 23655298 - 23655365
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||| |||| ||||||||| |||||  || ||| |||||||||||||| |||||    
T  23655298 tgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccga 23655365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 42475947 - 42475889
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggag 270  Q
    |||||| |||||| ||||||||| |||||| ||||||||  || |||||||||||||||    
T  42475947 tgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatggag 42475889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 35256199 - 35256146
Alignment:
Q  226 catccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||||||||||||||||||  || |||| |||||| |||||| |||||    
T  35256199 catccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccga 35256146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 43801541 - 43801474
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||||    
T  43801541 tgccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccga 43801474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 6911100 - 6911039
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  6911100 tgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcat 6911039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 15009088 - 15009155
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||| |||||    
T  15009088 tgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 15009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 14999242 - 14999181
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  14999242 tgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcat 14999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 16324912 - 16324848
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||    
T  16324912 cacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccga 16324848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 43801701 - 43801768
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||    
T  43801701 tgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccga 43801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 8489444 - 8489383
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||||||||||||| ||||||||| |||||  || ||| ||||||||||||||    
T  8489444 tgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcat 8489383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 16325080 - 16325137
Alignment:
Q  216 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||| ||||||||| ||||||||||||||| |||||| || |||||| |||||    
T  16325080 acatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcat 16325137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 6911259 - 6911302
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagt 255  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||    
T  6911259 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagt 6911302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 41722061 - 41722112
Alignment:
Q  216 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatg 267  Q
    ||||||||| ||||||| ||||||||  ||||||||||| ||||||||||||    
T  41722061 acatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatg 41722112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 22781126 - 22781072
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaat 266  Q
    ||||||||| ||| ||||||||| || ||||||||||||  ||||||||||||||    
T  22781126 tgccacatgccttgcatccaaaccctgaatggagtaaatgaagtttagcctaaat 22781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 41403993 - 41404051
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||| ||||||||| |||||| |||||||| ||  ||| ||||||||||||||    
T  41403993 cacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcat 41404051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 35207405 - 35207466
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35207405 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcat 35207466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 19318215 - 19318157
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||    
T  19318215 cacatgtcttacatccaaactctaaatggagtaaatggcgcttaacctaaatggagcat 19318157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 35207249 - 35207192
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 269  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  35207249 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatgga 35207192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 29474646 - 29474702
Alignment:
Q  216 acatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagca 272  Q
    ||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  29474646 acatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagca 29474702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 39983870 - 39983928
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||| ||||||||| ||||||||||||||| ||| || |||||||||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcat 39983928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 19318452 - 19318516
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||| |||| ||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 19318516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 25048257 - 25048321
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||| ||||||||  ||||||| ||||||| ||| |||||||||||||||||| |||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccga 25048321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 6408484 - 6408551
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatag-agtttagcctaaatggagcatgcccg 278  Q
    ||||||||||||| ||||||||| ||||||| |||||| || |||||| |||||||||||||| ||||    
T  6408484 tgccacatgtcttgcatccaaaccctaaatgaagtaaaaagaagtttaacctaaatggagcatacccg 6408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 19318378 - 19318445
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||| ||||  ||||||||||||||  || |||||||||||||||||| |||||    
T  19318378 tgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccga 19318445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 35363389 - 35363322
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||| || |||| ||||||||||||||||||||  |  |||||||||||||||||| |||||    
T  35363389 tgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccga 35363322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 3740714 - 3740647
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||| ||| ||||||||||||||  |||||||| |||||| |||||| ||||||| |||||| |||||    
T  3740714 tgccgcatatcttacatccaaaccttaaatggaataaataaagtttaacctaaattgagcatacccga 3740647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 2834429 - 2834490
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||| ||  |||||||| ||||||||| ||||| ||  ||||||||||||||||||    
T  2834429 tgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcat 2834490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 17370138 - 17370071
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||    
T  17370138 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccga 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 14076899 - 14076960
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  14076899 tgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcat 14076960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 31194036 - 31193969
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  31194036 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 31193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 31194195 - 31194262
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| |||||||||||||||||| |||||    
T  31194195 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccga 31194262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 8754729 - 8754662
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| |||||| |||||||| |||||||| |||||||||| || |||||    
T  8754729 tgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccga 8754662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 36955524 - 36955583
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagc 271  Q
    ||||||||||||| || |||||| |||||| |||||||||||| ||||||||||||||||    
T  36955524 tgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagc 36955583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 32347130 - 32347188
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||||||    
T  32347130 cacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcat 32347188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 36955371 - 36955315
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagc 271  Q
    |||||||||| ||||||||| |||||||||||||||  || ||||||||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagc 36955315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 4371525 - 4371458
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  4371525 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 4371458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 22563281 - 22563214
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  22563281 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 22563214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 22563440 - 22563507
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||| |||||    
T  22563440 tgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccga 22563507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 12232634 - 12232573
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||    
T  12232634 tgccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcat 12232573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 29893030 - 29893094
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||| |||||    
T  29893030 cacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccga 29893094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 17200149 - 17200082
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||||||||||||  ||||||||||||||| ||| || ||||||||||||||| |||||    
T  17200149 tgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccga 17200082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 21265634 - 21265573
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||| |||| |||||||||||||    
T  21265634 tgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcat 21265573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 34645776 - 34645833
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 269  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||    
T  34645776 tgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatgga 34645833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 34645618 - 34645551
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| |||||| || ||||||||||||||||||  ||| ||||||| |||||| |||||    
T  34645618 tgccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccga 34645551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 17200308 - 17200364
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatgga 269  Q
    |||||||||||||||||||||||  |||||||||||||| ||| |||| |||||||||    
T  17200308 tgccacatgtcttacatccaaaccttaaatggagtaaatggagcttag-ctaaatgga 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 20296646 - 20296707
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||||||||||||||    |||||||||||||| ||| ||||||||||| ||||||    
T  20296646 tgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcat 20296707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 21265792 - 21265853
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| ||||||||| |||||| |||||||| ||| ||||| ||||| ||||||    
T  21265792 tgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcat 21265853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 20296333 - 20296272
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||| ||||||| ||||||||| ||||||| ||||||| ||  |||||| |||||||||||    
T  20296333 tgccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaatggagcat 20296272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 4682825 - 4682789
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaat 250  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaat 4682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 38500053 - 38500118
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||||||| |||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccga 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 4041413 - 4041480
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| |||||||||||||||  || |||||||||||||||||| |||||    
T  4041413 tgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccga 4041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 8799388 - 8799321
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||    
T  8799388 tgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccga 8799321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 38499890 - 38499823
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||||||  |||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  38499890 tgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccga 38499823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 53197213 - 53197279
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccg 278  Q
    ||||||||||||| ||||||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  53197213 tgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 53197279  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 43797423 - 43797362
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||||| |||||||||  |||||||||||||| ||| ||||||||||||||||||    
T  43797423 tgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcat 43797362  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 43797585 - 43797643
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||| ||||||||| |||||| |||||||| ||  ||||||||||||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcat 43797643  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 46883486 - 46883452
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagt 246  Q
    ||||||||||||||||||||||| |||||||||||    
T  46883486 tgccacatgtcttacatccaaaccctaaatggagt 46883452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 46883642 - 46883680
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaat 250  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  46883642 tgccacatgtcttgcatccaaaccctaaatggagtaaat 46883680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 29828911 - 29828972
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||| |||||||||||||  ||||||||| ||||| ||| ||||| ||||| ||||||    
T  29828911 tgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagcat 29828972  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 43797871 - 43797911
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatag 252  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  43797871 tgccacatgtcttgcatccaagccctaaatggagtaaatag 43797911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 24883042 - 24882975
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||| |||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||    
T  24883042 tgccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccga 24882975  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 33400926 - 33400859
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||| |||||||||||||  |||||||||||||| ||| ||||| ||||||||||||||||||    
T  33400926 tgccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccga 33400859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 3385543 - 3385608
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||| |||||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccga 3385608  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 33156684 - 33156745
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||||||    
T  33156684 tgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcat 33156745  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 24883198 - 24883265
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||| |||| ||||||||| ||||||||||||||| ||| |||||||||||||| ||| |||||    
T  24883198 tgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccga 24883265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 27171870 - 27171803
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    |||||||||||||||||||||||  ||||||||||||||  || |||||||||||| ||||| |||||    
T  27171870 tgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccga 27171803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 49777056 - 49777123
Alignment:
Q  215 cacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccgactc 282  Q
    |||||||||| ||||||||| |||||| || ||||| |||||||||||||||||||||| || |||||    
T  49777056 cacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcataccggactc 49777123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 33156520 - 33156460
Alignment:
Q  218 atgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||||||||||||||||||||||| |||  |||||| |||||||||| |||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccga 33156460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 49776888 - 49776823
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||| ||||||||  |||||||||||||||| || ||||| |||||||||||| |||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccga 49776823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 3385379 - 3385312
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||||||||||||| |||||||| |||||   || |||||||||||| ||||| |||||    
T  3385379 tgccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccga 3385312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 5771979 - 5771918
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||| || |||||||| |||||||||||||||||||||  || |||| |||||||||||||    
T  5771979 tgccatatatcttacattcaaactctaaatggagtaaatgaagcttagtctaaatggagcat 5771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 34970054 - 34969989
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||| ||||||||  |||||| |||||||| ||||||| |||||||| ||||| |||||    
T  34970054 ccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccga 34969989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 34622555 - 34622622
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||| |||||  |||||||||||| | ||| |||| ||||||||||||| |||||    
T  34622555 tgccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccga 34622622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 13946993 - 13946960
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggag 245  Q
    ||||||||||||||||||||||| ||||||||||    
T  13946993 tgccacatgtcttacatccaaaccctaaatggag 13946960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 33401086 - 33401147
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    |||||||||||||||||| ||||  |||||  ||||||| ||| |||||||||||| |||||    
T  33401086 tgccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcat 33401147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 13947154 - 13947190
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaat 250  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  13947154 ccacatgtcttacatccaaacgctaaatggaataaat 13947190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 16125593 - 16125526
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||| ||||||| | |||||  ||||||||||||||||||||| |||||    
T  16125593 tgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccga 16125526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 22748659 - 22748592
Alignment:
Q  212 tgccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcatgcccga 279  Q
    ||||||||||||| ||||||||   |||||||||||||| |||  |||||||||| |||||| |||||    
T  22748659 tgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccga 22748592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 22748820 - 22748879
Alignment:
Q  214 ccacatgtcttacatccaaactctaaatggagtaaatagagtttagcctaaatggagcat 273  Q
    ||||||||||| ||||||||  ||||||||||||||| ||  |||| |||||||||||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcat 22748879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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