View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_7 (Length: 529)
Name: NF11217_low_7
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 6034241 - 6034606
Alignment:
| Q |
6 |
aactgctaactatgcacaagttgaacatggagttcctcgaaaagcaatagaaccaagttacaaaataataacaagaaaaccctacaatacgatattgatg |
105 |
Q |
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| T |
6034241 |
aactgctaactatgcacaagttgaacatggagttcctcgaaaagcaatagaaccaagttacaaaataataacaagaaaaccctacaatacgatattgatg |
6034340 |
T |
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| Q |
106 |
tatagtgaagtccttaatattattgagattacatctctttgaatacaattgtacataagtagtttacaaatattgatgtatagtgatgtaccttcaa--- |
202 |
Q |
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| T |
6034341 |
tatagtgaagtccttaatattattgacattacatctctttgaatacaattgtacataagtagtttacaaatattgatgtatagtgatgtaccttcaatat |
6034440 |
T |
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| Q |
203 |
---gatgacaacctctttatattataggttcgattcctttaaagtaaataggtcttctggttgagactaattctaagagaatgtctacttggaaaccttt |
299 |
Q |
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| T |
6034441 |
gctgatgacaacctctttatattataggttcgattcctttaaagtaaataggtcttc-ggttgagactaattctaagagaatgtctacttggaaaccttt |
6034539 |
T |
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| Q |
300 |
gttggataatcaggtaacacttttaagctcgtcgagtaatagattgccagtttgggtggaagtgtga |
366 |
Q |
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| T |
6034540 |
gttggataactaggtaacacttttaagctcgtcgagtaatagattgccagtttgtgtggaagtgtga |
6034606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 381 - 524
Target Start/End: Original strand, 6034921 - 6035067
Alignment:
| Q |
381 |
acctttgtggaatgatatctagttgagtgttactc---ctttgaggatttgttaccccatgctcttttaggtctctattcattaaaaataaagtgattgg |
477 |
Q |
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| T |
6034921 |
acctttgtggaatgatatctagttgagtgttattagttctttgaggattagttaccccaggctctttcaagtctctattaaaaaagaataaagtcattgg |
6035020 |
T |
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| Q |
478 |
tatgactttgagagagggatatgggtgggtttgggatcttaagtgga |
524 |
Q |
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| T |
6035021 |
tatgactatgagagagtgatgtgggtgggtttcagatcttaagtgga |
6035067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 524
Target Start/End: Complemental strand, 5874154 - 5874045
Alignment:
| Q |
416 |
ctttgaggatttgttaccccatgctcttttaggtctctattcattaaaaa--taaagtgattggtatgactttgagagagggatatgggtgggtttggga |
513 |
Q |
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| T |
5874154 |
ctttgagggtttgttatcccaggctctttcaggtctctattcagaaagaagttaaagtgattgatatgactttgaga-agggatatgggtgggcttgaga |
5874056 |
T |
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| Q |
514 |
tcttaagtgga |
524 |
Q |
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|||| |||||| |
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| T |
5874055 |
tcttgagtgga |
5874045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 5219217 - 5219258
Alignment:
| Q |
266 |
ctaattctaagagaatgtctacttggaaacctttgttggata |
307 |
Q |
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| T |
5219217 |
ctaattctaagagattgtctacttggcagcctttgttggata |
5219258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 16573919 - 16573960
Alignment:
| Q |
266 |
ctaattctaagagaatgtctacttggaaacctttgttggata |
307 |
Q |
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| T |
16573919 |
ctaattctaagagattgtctacttggtagcctttgttggata |
16573960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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