View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_8 (Length: 523)
Name: NF11217_low_8
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_8 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 22 - 516
Target Start/End: Original strand, 29468706 - 29469199
Alignment:
| Q |
22 |
gcgtcgacattgcaatccacttcactggctaccagtctaatccacccttcttgactatgatctgtcatttccaatgttgtggtattctcctggttctctc |
121 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||||||| |
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| T |
29468706 |
gcgtcgacattgcaatccacctcactggctaccggtctaatccacccttcttgactatgatatgccatt-ccattgttgtggtattttcctggttctctc |
29468804 |
T |
|
| Q |
122 |
cattctcagacatacgcggacctactgccactgaagtaagacatcacgcaccatacacactgagatacatggttgtgtttcgacgtcattccacaacttg |
221 |
Q |
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||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29468805 |
cattctctgacttacgtggacctactgccactgaagtaagacatcacgcaccatacacactgagatacatggttgtatttcgacgtcattccacaacttg |
29468904 |
T |
|
| Q |
222 |
tcgttttgtcgtttccagatgcatcaaagggtcagtacgaaatcaaagagttgttggtgttgtagagattctactaactgaaagtaaagagctacaaaac |
321 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29468905 |
tcgttttgtcgtttccagatgcatcaaagggtcagtacgaaatcaaagagttgttggtgttgtagagattctactaactgaaagtaaagtgctacaaaac |
29469004 |
T |
|
| Q |
322 |
catatgtcgtatccaagttgtcttgaataatgttctatagacctgctacacttcacacctcctctagttttgcacatccgaaaaagacatgtcattcatt |
421 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29469005 |
catatgtcgtatccaagttgtcttgtataatgttctatagacctgctacacttcacacctcctctagttttgcacatccgaaaaagacatgtcattcatt |
29469104 |
T |
|
| Q |
422 |
ctcatatgagctttcacaaggcacacaacaatcacaacaatgtaccccgtgagtttaaagcccgtgtctcgtgggtaaatacctcttctctgctc |
516 |
Q |
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| T |
29469105 |
ctcatatgagctttcacaaggctcgcaacaatcacaacaatgtacaccgcgagtttaaagcccgtgtctcgcgggtaaatacgtcttttctgctc |
29469199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 98 - 439
Target Start/End: Original strand, 37924046 - 37924386
Alignment:
| Q |
98 |
ttgtggtattctcctggttctctccattctcagacatacgcggacctactgccactgaagtaagacatcacgcaccatacacactgagatacatggttgt |
197 |
Q |
| |
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|||||||||||||| ||||||||| ||||| || ||| ||||||| |||||| |||| |||||||||| | ||||| ||| |||||| ||||||| |
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| T |
37924046 |
ttgtggtattctccatgttctctcc-ttctctgatgtacacggacctgctgccattgaaataagacatcatgtgccatattcaccaagatacgtggttgt |
37924144 |
T |
|
| Q |
198 |
gtttcgacgtcattccacaacttgtcgttttgtcgtttccagatgcatcaaagggtcagtacgaaatcaaagagttgttggtgttgtagagattctacta |
297 |
Q |
| |
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||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||| || |
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| T |
37924145 |
gtttcgacgtcgttccacaacttgttatttctccgtttccagatgcaccaaagggtcattacaaaatcaaagagttgttggtgatgtagagattctagta |
37924244 |
T |
|
| Q |
298 |
actgaaagtaaagagctacaaaaccatatgtcgtatccaagttgtcttgaataatgttctatagacctgctacacttcacacctcctctagttttgcaca |
397 |
Q |
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||| ||| |||||||||||||| ||| | ||| |||||||||||||| ||||||| | ||||| ||||| |||| | ||||||||||||||||||||| |
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| T |
37924245 |
acttgaagaaaagagctacaaaatcatccgccgtttccaagttgtcttgtataatgtgccatagatctgctgcactccgcacctcctctagttttgcaca |
37924344 |
T |
|
| Q |
398 |
tccgaaaaagacatgtcattcattctcatatgagctttcaca |
439 |
Q |
| |
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||| || ||||||| || ||||||||||| ||||| ||||| |
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|
| T |
37924345 |
tccaaagaagacataccagtcattctcataggagctctcaca |
37924386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 430
Target Start/End: Complemental strand, 37871640 - 37871408
Alignment:
| Q |
197 |
tgtttcgacgtcattccacaacttgtcgttttgtcgtttccagatgcatcaaagggtcagtacgaaatcaaagagttgttggtgttgtagagattctact |
296 |
Q |
| |
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||||||||||||||||||||| || ||||| ||| ||||| || || ||||| | || ||| ||||| | ||||||| ||| ||||| |||||| | |
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| T |
37871640 |
tgtttcgacgtcattccacaattttccgtttcgtctcttccatatacaccaaagagacattacaaaatcgagaagttgtttgtgatgtaggcattctaat |
37871541 |
T |
|
| Q |
297 |
aactgaaagtaaagagctacaaaaccatatgtcgtatccaagttgtcttgaataatgttctatagacctgctacacttcacacctcctctagttttgcac |
396 |
Q |
| |
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|| |||| | | ||||||||| |||||||||| | ||||| || ||||| |||| | | ||||||||||| |||| || || | ||||| |||||||| |
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| T |
37871540 |
aattgaatgaatagagctacagaaccatatgtaatctccaaattctcttgtttaat-tgccatagacctgctgcactccaaacttgctctaattttgcac |
37871442 |
T |
|
| Q |
397 |
atccgaaaaagacatgtcattcattctcatatga |
430 |
Q |
| |
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||||||||||||||||||| | ||||||||||| |
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| T |
37871441 |
atccgaaaaagacatgtcagccgttctcatatga |
37871408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 18055538 - 18055490
Alignment:
| Q |
391 |
ttgcacatccgaaaaagacatgtcattcattctcatatgagctttcaca |
439 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||| ||||| |
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| T |
18055538 |
ttgcacatgcgaaaaagacatgtcaattgttctcatatgagctatcaca |
18055490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 48 - 498
Target Start/End: Original strand, 40730764 - 40731211
Alignment:
| Q |
48 |
ggctaccagtctaatccacccttcttgactatgatctgtcatttccaatgttgtggtattctcctggttctctccattctcagacatacgcggacctact |
147 |
Q |
| |
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||||||| ||||||||||||| ||| || |||||||| |||| ||| | ||| ||||||||||| ||||||||| ||| | ||| |||| |||||| || |
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| T |
40730764 |
ggctaccggtctaatccacccctctcgaaaatgatctgacatt-ccattattgcggtattctccttgttctctcc-ttccctgacttacgtggacctgct |
40730861 |
T |
|
| Q |
148 |
gccactgaagtaagacatcacgcaccatacacactgagatacatggttgtgtttcgacgtcattccacaacttgtcgttttgtcgtttccagatgcatca |
247 |
Q |
| |
|
|||||||||||| | || |||| |||| |||| |||||| ||||||||||||||||| ||||| ||| |||||||| || ||||||| ||||| || |
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| T |
40730862 |
gccactgaagtaggttataacgcgtcatatgcactaagatacgcggttgtgtttcgacgtcgttccaaaacatgtcgtttcgttgtttccatatgcacca |
40730961 |
T |
|
| Q |
248 |
aagggtcagtacgaaatcaaagagttgttggtgttgtagagattctactaactgaaagtaaagagctacaaaaccatatgtcgtatccaagttgtcttga |
347 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| ||||||||||| |||| ||| ||| | |||||||||||| || |||||| |||| ||| |
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|
| T |
40730962 |
aagggtcattatgaaatcaagaagttgttggtgttatagagattctagtaac-aaaaacaaaaaactacaaaaccatcattcatatccatattgttttgt |
40731060 |
T |
|
| Q |
348 |
ataatgttctatagacctgctacacttcacacctcctctagttttgcacatccgaaaaagacatgtcattcattctcatatgagctttcacaaggcacac |
447 |
Q |
| |
|
||||||| ||| ||||||| |||| |||||||| |||||||||||| | | ||||| |||||| | ||||| |||||||| || ||| | |||| | |
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|
| T |
40731061 |
ataatgtgtcatatacctgctgcactccacacctcatctagttttgcatgttcaaaaaatacatgtaagtcattttcatatgaactatcagagtgcacgc |
40731160 |
T |
|
| Q |
448 |
aacaatcacaacaatgtaccccgtgagtttaaagcccgtgtctcgtgggta |
498 |
Q |
| |
|
||| ||||||||||||||| || ||||||||| |||||||| |||||| |
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|
| T |
40731161 |
aacgatcacaacaatgtacaccacatgtttaaagcacgtgtctcatgggta |
40731211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 90 - 324
Target Start/End: Complemental strand, 4430459 - 4430227
Alignment:
| Q |
90 |
ttccaatgttgtggtattctcctggttctctccattctcagacatacgcggacctactgccactgaagtaagacatcacgcaccatacacactgagatac |
189 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||| ||||| || ||||||||| | ||||| | | ||||||||| | | ||||| |||||| |||| |
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|
| T |
4430459 |
ttccattgttgtggtattttccttgttctctcc-ttctctgaattacgcggacttgttgccattcgaataagacatcgcacgccatattcactgatatac |
4430361 |
T |
|
| Q |
190 |
atggttgtgtttcgacgtcattccacaacttgtcgttttgtcgtttccagatgcatcaaagggtcagtacgaaatcaaagagttgttggtgttgtagaga |
289 |
Q |
| |
|
|||| ||||||||||| ||||| |||| || |||| | |||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
4430360 |
gcggttatgtttcgacgttgttccataactcgttgtttcgccgtttccatatgcaccaaaggatcattacgaaatcaaagagttgttggtgttgtaaaga |
4430261 |
T |
|
| Q |
290 |
ttctactaactgaaagtaaagagctacaaaaccat |
324 |
Q |
| |
|
|| || |||| | ||| ||||||||| |||||||| |
|
|
| T |
4430260 |
ttatagtaac-ggaagaaaagagctagaaaaccat |
4430227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 482
Target Start/End: Original strand, 19060 - 19234
Alignment:
| Q |
309 |
agagctacaaaaccatatgtcgtatccaagttgtcttgaataatgttctatagacctgctacacttcacacctcctctagttttgcacatccgaaaaag- |
407 |
Q |
| |
|
|||||||||||| ||| || || ||||| || ||||| ||||| | | ||||||||||| |||| || || | || | ||| ||||||| |||||| |
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| T |
19060 |
agagctacaaaatcatccgtagtttccaaattctcttgtataatatgccatagacctgctgcactccaaacttgttcaaatttcgcacatcagaaaaaac |
19159 |
T |
|
| Q |
408 |
acatgtcattcattctcatatgagctttcacaaggcacacaacaatcacaacaatgtaccccgtgagtttaaagc |
482 |
Q |
| |
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|||||||| || |||||||||||||| ||||| ||||||| | ||||| |||||| || | |||||||| |||| |
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|
| T |
19160 |
acatgtcagtcgttctcatatgagctctcacagtgcacacatcgatcactacaatggacactgtgagtttgaagc |
19234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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