View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11217_low_9 (Length: 506)
Name: NF11217_low_9
Description: NF11217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11217_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 3426505 - 3427006
Alignment:
| Q |
1 |
tgagcttgttggttctaaatattgtgtgttatgtaggtaaacagtttgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattct |
100 |
Q |
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| T |
3426505 |
tgagcttgttggttctaaatattgtgtgttatgtaggtaaacagattgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattct |
3426604 |
T |
|
| Q |
101 |
gctttaagtgatcaacaaatcctaagcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426605 |
gctttaagtgatcaacaaatcctaagcaccaaacaattattcgtttattcttgacttcattttgatagtatataatatgcacacttttgaaaacgttaga |
3426704 |
T |
|
| Q |
201 |
ggataaaatat-ct----ttttgttatcatcaaaattcgaagataacccatattt--------tgaatctaaccatattaacatggtatacattcaatct |
287 |
Q |
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||||||||||| || |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
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| T |
3426705 |
ggataaaatatgctcatattttgttatcatcaaaattcgaagataattgtttcttgaccaacttgaatctaaccatattaacatggtatacattcaatct |
3426804 |
T |
|
| Q |
288 |
aacattcacattcttgttagatgaaactcatatgggttactccactctatgtaggcaccatttaaaaagtgtgagatttaaattaattttatccaataaa |
387 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426805 |
aacattcacactcttgttagatgaaacccatatgggttactccaatctatgtaagcaccatttaaaaagtgtgagatttaaattaattttatccaataaa |
3426904 |
T |
|
| Q |
388 |
aaagtgttagatatcgtatttaaaagagagtgttcataacacttctcatttttatgataatgatatatctgacggaaaccttgctcacatgagcatcaca |
487 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3426905 |
agagtgttagatatcgtatttaaaagagagtgttcataacacttctcatttttataataatgatatatctgaccgaaaccttgctcacatgagcatcaca |
3427004 |
T |
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| Q |
488 |
cc |
489 |
Q |
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| T |
3427005 |
cc |
3427006 |
T |
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