View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_12 (Length: 482)
Name: NF11218_high_12
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 2368932 - 2369396
Alignment:
| Q |
16 |
ttatggacatgggaagtataagcatggcaaatttggcaagcgttggaagcatggtaggtttggttttggcaagtttaagcatggaaaatttggcaaaaga |
115 |
Q |
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| T |
2368932 |
ttatggacatgggaagtataagcatggcaaatttggcaagcgttggaagcatggtaggtttggttttggcaagtttaagcatggaaaatttggcaaacga |
2369031 |
T |
|
| Q |
116 |
tggaagtgatacaggggcaaatatat-----------atgcaactttgagcatgatcatggatgctaaatttttagattaataataatgtatgctaattg |
204 |
Q |
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| T |
2369032 |
tggaagtgatacaggggcaaatatattaagtatatatatgcaactttgagcatgatcatggatgctaaatttttagattaataataatgtatgctaattg |
2369131 |
T |
|
| Q |
205 |
ctgtt-agcaacatatatagttttgaatttcagttggatgtttgcaatgaacaattattgttgtatgtatatgaa-gcccttaactttaatttatttagg |
302 |
Q |
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| T |
2369132 |
ctgtttagcaacatatatagttttgaatttcagttggatgtttgcaatgaacaattattgttgtatgtatatgaaagcccttaacttta-----tttagg |
2369226 |
T |
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| Q |
303 |
tctgtttggattctcttattaaaacttgttatgaagatatcttatgacatgtttctcattctcaatcacggccaatttttggaacccattatcagaatct |
402 |
Q |
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| T |
2369227 |
tctgtttggattgtcttattaaaacttgttatgaagatatcttatgacatgtttctcattctcaatcacggccaatttctggaacccattatcataatct |
2369326 |
T |
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| Q |
403 |
attttgcctccgtatccccaatgttattttaagaggaatcatgaacgatgctgctcctcatctctttctt |
472 |
Q |
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| T |
2369327 |
attttgcctccatatccccaatgttattttaagaggaatcatgaacgatgctgctcctcatctctttctt |
2369396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 36697896 - 36698010
Alignment:
| Q |
358 |
tcattctcaatcacggccaatttttggaacccattatcagaatctattttgcctccgtatccccaatgttattttaagaggaatcatgaacgatgctgct |
457 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
36697896 |
tcattctcaatcacggccaatttctggaacccattatcagaatctattttgcctccatatcctccatgttattttaagaggaatcatgaacgatgttgct |
36697995 |
T |
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| Q |
458 |
cctcatctctttctt |
472 |
Q |
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| T |
36697996 |
cctcatctctttctt |
36698010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 472
Target Start/End: Original strand, 20104598 - 20104681
Alignment:
| Q |
388 |
ccattatcagaatctattttgcctccgtatccccaatgttattttaagaggaatcatgaacgatgctgctcctcatctctttctt |
472 |
Q |
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| T |
20104598 |
ccattatcgaaatctatttggcctccatatcccca-tgttattttaagaagaatcatggaggatgctgctcctcgtctctttctt |
20104681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 2365550 - 2365663
Alignment:
| Q |
92 |
aagcatggaaaatttggcaaaagatggaagtgatacaggggcaaatatat-----atgcaactttgagcatgatcatggatgctaaatttttagattaat |
186 |
Q |
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| T |
2365550 |
aagcatggaaaattcggcaagggatggaagtgatgcagaggcgaatatattaaatatccaactttgagcatgatcatcaatgctgaattattagatgaat |
2365649 |
T |
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| Q |
187 |
aataatgtatgctaatt |
203 |
Q |
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| T |
2365650 |
a---atgtatgctaatt |
2365663 |
T |
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