View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_20 (Length: 351)
Name: NF11218_high_20
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 34790195 - 34789874
Alignment:
| Q |
19 |
tcttgctctctcaaattcacactcaacagtttcaaaatcaacgtatgcctgttatatattcacaattttacagttaggttatgaccagcatgcatagatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790195 |
tcttgctctctcaaattcacactcaacagtttcaaaatcaacgtatgcctgttatatattcacaattttacagttaggttatgaccagcatgcatagatg |
34790096 |
T |
|
| Q |
119 |
gttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacattagaagcttccataggcaataaatgctacgatttggcttttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790095 |
gttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacattagaagcttccataggcaataaatgctacgatttggcttttgt |
34789996 |
T |
|
| Q |
219 |
acaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagctcaaatattgctctagctcgttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789995 |
acaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagctcaaatattgctctagctcgttc |
34789896 |
T |
|
| Q |
319 |
ggtctcagctaaagatctctct |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34789895 |
ggtctcagctaaagatctctct |
34789874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 2288568 - 2288726
Alignment:
| Q |
19 |
tcttgctctctcaaattcacactcaacagtttcaaaatcaacgtatgcctgttatatattcacaattttacagttaggttatgaccagcatgcatagatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2288568 |
tcttgctctctcaaattcacactcggcagtttcaaaatcaatgtatgcctgttatatattcacaattttacagttaggttatgaccagcatgcatagatg |
2288667 |
T |
|
| Q |
119 |
gttcatagatgtggtatgcatcagaagatgacaacaaaagagaaagagaaatcacatta |
177 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2288668 |
gttcatagatatggtatgcatcagaagatgacaacaaaggagaaagagaaatcacatta |
2288726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 221 - 340
Target Start/End: Original strand, 2288943 - 2289062
Alignment:
| Q |
221 |
aataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagctcaaatattgctctagctcgttcgg |
320 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2288943 |
aataaataaataaattttatgtgtaccttccacaacaactcaggcatgtccaatgctggttgggcaattgcaagctcaaatattgctctagctcgttcag |
2289042 |
T |
|
| Q |
321 |
tctcagctaaagatctctct |
340 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2289043 |
tctcagctaaagatctctct |
2289062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 49275991 - 49276046
Alignment:
| Q |
284 |
gcaattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctc |
339 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
49275991 |
gcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctc |
49276046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 49279548 - 49279603
Alignment:
| Q |
284 |
gcaattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctc |
339 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||| | |||||||||| |
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|
| T |
49279548 |
gcaattgcagactcaaatattgctctagctcgttcagtctcagatgaagatctctc |
49279603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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