View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11218_high_22 (Length: 328)
Name: NF11218_high_22
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 43721966 - 43722171
Alignment:
| Q |
115 |
aaagtctcaccatcaatgtaatagtaatagaaccaataattagggctgagcaagaggcaatttatgttgagcatcgatgtatattctttagactccaacg |
214 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43721966 |
aaagtctcaccatcaatgta-tactaatagaactaataattagggctgagcaagaggcaatttatgttgagcatcaatgtatattctttagactccaacg |
43722064 |
T |
|
| Q |
215 |
ttgtcgccagacccaaacaaacttgatgctttaccatgaaatgatggaacagatattaaagtgagtaaggtcttatttttccctaattcacatcctcttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43722065 |
ttgtcgccagacccaaacaaacttgatgctttaccatgaaatgatggaacagatgttaaagtgagtaaggtcttatttttccctaattcacatcctcttt |
43722164 |
T |
|
| Q |
315 |
cttctct |
321 |
Q |
| |
|
||||||| |
|
|
| T |
43722165 |
cttctct |
43722171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 43721672 - 43721770
Alignment:
| Q |
35 |
aataaaactcttctatattttaataaaatacaagattacta--cctaatatatatttcattttaaatactattttgtttatcaaagtctcaccatcaat |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43721672 |
aataaaactcttctatattttaataaaatacaagattactatacctaatacatatttcattttaaatactattttgtttatcaaagtctcaccatcaat |
43721770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University