View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_23 (Length: 326)
Name: NF11218_high_23
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 70 - 315
Target Start/End: Complemental strand, 44552515 - 44552271
Alignment:
| Q |
70 |
tcaaccaacccattttaattacaaatatagggcaccaagtttatcccgatagcggtcataactacacatattatccgcgagtctagccaaataacgaaag |
169 |
Q |
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| T |
44552515 |
tcaaccaacccattttaattacaaatatagggcaccaagtt-atcccgatagcggtcataactacacacattatccgcgagtctaaccaaataacgaaag |
44552417 |
T |
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| Q |
170 |
acacaactggtttttgtaggtcacgttcatggtcaatagaattacgagttatgtcacattatctaattatcacttgtaattatttttaaacgcaccctta |
269 |
Q |
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| T |
44552416 |
acacaactagtttttgtaggtcacgttcatggtcaatagaattacgagttatgtcacattatctaaatatcacttgtaattatttttaaacgcaccctta |
44552317 |
T |
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| Q |
270 |
atcactgcaaaagaagatacttaatttaaaatgtagtaggtttcat |
315 |
Q |
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| T |
44552316 |
atcactgcaaaagaagatacttaatttaaaacgtagtaggtttcat |
44552271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 44552591 - 44552540
Alignment:
| Q |
19 |
ctcccttcctcacaaaatgcagccatcaataaactatagctaacaatccatt |
70 |
Q |
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| T |
44552591 |
ctcccttcctcacaaaatgcagccatcaataaactatagctaacaatccatt |
44552540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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