View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_33 (Length: 268)
Name: NF11218_high_33
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 39841762 - 39841524
Alignment:
| Q |
18 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
117 |
Q |
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| T |
39841762 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatg-taaagtagctgagtgcaaaatggtagactaaataatattccttc |
39841664 |
T |
|
| Q |
118 |
taagacaaagaat-tatattcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaggtcactgtccagcg |
216 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39841663 |
taagacaaagaatatatattcacagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagcg |
39841564 |
T |
|
| Q |
217 |
gatctccaccaacccgcaacccctatccggacacaggttc |
256 |
Q |
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||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
39841563 |
gatctccaccaccccgcaacccctatctggacaaaggttc |
39841524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 39846815 - 39846576
Alignment:
| Q |
18 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846815 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacacgaaatg-taaagtagctgagtgcaaaatggtagactacataatattccttc |
39846717 |
T |
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| Q |
118 |
taagacaaagaattatat--tcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaggtcactgtccagc |
215 |
Q |
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||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39846716 |
taagacagagaattatatattcacagcccaagcatcaggcctgtacagttcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
39846617 |
T |
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| Q |
216 |
ggatctccaccaacccgcaacccctatccggacacaggttc |
256 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||| |
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| T |
39846616 |
ggatctccaccaccccgcaacccctatccggacaaaggttc |
39846576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 44796550 - 44796789
Alignment:
| Q |
18 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44796550 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcaaatgaaatg-taaagtagctgagtgcaaaatggtagactacataatattccttc |
44796648 |
T |
|
| Q |
118 |
taagacaaagaattata--ttcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaggtcactgtccagc |
215 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44796649 |
taagacagagaattatatattcacagcccaagcatcaagcctgtacaattcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
44796748 |
T |
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| Q |
216 |
ggatctccaccaacccgcaacccctatccggacacaggttc |
256 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |||||| |
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| T |
44796749 |
ggatctccaccaccccgcaacccctatccggacaaaggttc |
44796789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 35163633 - 35163393
Alignment:
| Q |
18 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatggtaaagtagctgagtgcaaaatggtagactacataatattccttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35163633 |
agccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatg-taaagtagctaagtgcaaaatggtagactacataatattccttc |
35163535 |
T |
|
| Q |
118 |
taagacaaagaattatat--tcacagcccaagcatcaagcctgtacagttcatcacccattgctgaaaagattaataagagacaaaggtcactgtccagc |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35163534 |
taagacaaagaattatatattcacagcccaagcatcaagcctgtacagtgcatcacccattgctgaaaagattaataagagacaaaagtcactgtccagc |
35163435 |
T |
|
| Q |
216 |
ggatctccaccaaccc-gcaacccctatccggacacaggttc |
256 |
Q |
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|||||||||||| ||| |||||||||||||||| | |||||| |
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| T |
35163434 |
ggatctccaccaccccggcaacccctatccggataaaggttc |
35163393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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