View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_4 (Length: 681)
Name: NF11218_high_4
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 6540387 - 6541054
Alignment:
| Q |
1 |
ctattttggttgtaattaaataattttatannnnnnnacctttaattgatgagtatttactaaaatgaataacatggtaacatttt-ttatacaagcagt |
99 |
Q |
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| T |
6540387 |
ctattttggttgtaattaaataattttttatttttttacctttaattgatgagtatttactaaaatgaatgacatggtaacatttttttatacaagcagt |
6540486 |
T |
|
| Q |
100 |
gttctaagggatccaaataactgactgtagttctctctcatgttgcaagaaatttgtattgtttatataacggactagaaaagagaacaatatccgattt |
199 |
Q |
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| T |
6540487 |
gttctaagggatccaaataactgactgtagctctctctcatgttgcaagaaatttgtattgtttatataacggactaaaaaagagaacaatatccgattt |
6540586 |
T |
|
| Q |
200 |
aaatgttaatggactagaaaacaaacgctcaaaaagttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggttattcctaggg |
299 |
Q |
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| T |
6540587 |
atatgttaatggactagaaaacaaacgctcaaaaggttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggttattcttaggg |
6540686 |
T |
|
| Q |
300 |
tatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacctttccaactttctgagtgtttgtttttcaagaaattcgt |
399 |
Q |
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| T |
6540687 |
catctttcttgaaatttcttgtgtccaaaggtttgattaaggatgctaaattggcttcatctttccaactttatgagtgtttgtttttcaagaagttcgt |
6540786 |
T |
|
| Q |
400 |
gaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatgttttcaattggtgttgaaaaaagattttaagctgggagatt |
499 |
Q |
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| T |
6540787 |
gaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatgttttcaattggtgttgaaaaaagattttaagctgggagatt |
6540886 |
T |
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| Q |
500 |
cgtgagcacaatctgaaaagttacaccaatcatgatttgtgatggactaacttgtcccttccctt--nnnnnnnnncgtgtgccttgatttttcattaca |
597 |
Q |
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| T |
6540887 |
cgcgagcacaatctaaaaagttacaccaatcatgatttgtgacggactaacttgtcccttccctttaaaaaaaaaacgtgtgccttgatttttcattaaa |
6540986 |
T |
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| Q |
598 |
atgccactatgtcagtaaataatattgttaatgttacatcacataataaacttagtagattaagaaac |
665 |
Q |
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| T |
6540987 |
atgccactatgtcagtaaataatgttgttaatgttacatcacataataaacttagtagattaagaaac |
6541054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 261 - 515
Target Start/End: Original strand, 6543040 - 6543295
Alignment:
| Q |
261 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacc |
360 |
Q |
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| T |
6543040 |
ttcttttgttgagtcttgagaaaagggttattcctagagcttttgtcttgaaatttcttgaatccaaaggtttgattaaggatgctaaattggctgcagc |
6543139 |
T |
|
| Q |
361 |
tttccaactttctgagtgtttgtttttcaagaaattcgtgaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatgtt |
460 |
Q |
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| T |
6543140 |
tttcaaagtttctgaggatgtgtttttgaagagatttgtgacttgctacgaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatgtt |
6543239 |
T |
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| Q |
461 |
ttcaattgg-tgttgaaaaaagattttaagctgggagattcgtgagcacaatctga |
515 |
Q |
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| T |
6543240 |
tccaataggatgttgaaaaaagattttaagccgtgagattggcgaccacaatctga |
6543295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 261 - 458
Target Start/End: Original strand, 6534291 - 6534488
Alignment:
| Q |
261 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacc |
360 |
Q |
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| T |
6534291 |
ttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacc |
6534390 |
T |
|
| Q |
361 |
tttccaactttctgagtgtttgtttttcaagaaattcgtgaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatg |
458 |
Q |
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| T |
6534391 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgaggaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
6534488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 649
Target Start/End: Original strand, 6538629 - 6538699
Alignment:
| Q |
580 |
ccttgatttttcattacaatgccactatgtcag-taaataatattgttaatgttacatcacataataaact |
649 |
Q |
| |
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||||||||||||||||||||||| |||||| || ||| |||| |||| |||| ||||||||||||| |||| |
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| T |
6538629 |
ccttgatttttcattacaatgccgctatgtgagataactaatgttgtaaatgctacatcacataattaact |
6538699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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