View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_5 (Length: 647)
Name: NF11218_high_5
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 19 - 629
Target Start/End: Complemental strand, 170801 - 170191
Alignment:
| Q |
19 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
118 |
Q |
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| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
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| Q |
119 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
218 |
Q |
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| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
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| Q |
219 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
318 |
Q |
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| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
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| Q |
319 |
aaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
418 |
Q |
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| T |
170501 |
aaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
170402 |
T |
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| Q |
419 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttcgtcagtcc |
518 |
Q |
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| T |
170401 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttcgtcagtcc |
170302 |
T |
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| Q |
519 |
atgcccttgtgtttgcccaaacatgtgttaggcgcaattattgccaggagtgactagggatataaggggatagtccctcgttgcattgttcagaggaatt |
618 |
Q |
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| T |
170301 |
atgcccttgtgtttgcccaaacatgtgttaggcccaattattgctaggagtgactagggatatagggggatagtccctcgttgcattgttcagaggaatt |
170202 |
T |
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| Q |
619 |
cttgtaatttg |
629 |
Q |
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| T |
170201 |
cttgtaatttg |
170191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 501
Target Start/End: Original strand, 9837658 - 9837827
Alignment:
| Q |
332 |
caaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacc |
431 |
Q |
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| T |
9837658 |
caaggacaagagtgctagaaagttatggctttctaaaaaaagctatgttgaataggtgttagaaaaatttgacatgagcaatttgaagactgcgagtact |
9837757 |
T |
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| Q |
432 |
tcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgt |
501 |
Q |
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| T |
9837758 |
tcattgacaaatcattttaagttctcgtttgattagtgtttaaagacaaatgtagaagttgagtatatgt |
9837827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 33559721 - 33559652
Alignment:
| Q |
441 |
aatcacttaaaactctcatttgattagtgtccaaagacagatgaagaagttgggtatatgtcagaggttc |
510 |
Q |
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| T |
33559721 |
aatcacttgaagctctcattggattagtgtccaaagatagatgcagaagttaagtatatgtcaaaggttc |
33559652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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