View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11218_high_7 (Length: 549)

Name: NF11218_high_7
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11218_high_7
NF11218_high_7
[»] chr2 (10 HSPs)
chr2 (36-543)||(5426006-5426513)
chr2 (402-466)||(680512-680576)
chr2 (416-470)||(3611231-3611285)
chr2 (405-469)||(42621375-42621439)
chr2 (423-466)||(12464491-12464534)
chr2 (423-469)||(1893299-1893345)
chr2 (424-469)||(5759594-5759639)
chr2 (461-494)||(14209236-14209269)
chr2 (423-472)||(33319830-33319879)
chr2 (423-499)||(32098348-32098424)
[»] chr1 (7 HSPs)
chr1 (138-325)||(6085733-6085920)
chr1 (425-472)||(489193-489240)
chr1 (423-469)||(7137016-7137062)
chr1 (400-450)||(10799487-10799537)
chr1 (447-499)||(26293170-26293222)
chr1 (404-468)||(37842354-37842418)
chr1 (423-471)||(41195211-41195259)
[»] chr8 (3 HSPs)
chr8 (402-494)||(20672731-20672823)
chr8 (422-499)||(39392699-39392777)
chr8 (430-482)||(30947490-30947542)
[»] scaffold0632 (1 HSPs)
scaffold0632 (211-260)||(2923-2972)
[»] chr7 (7 HSPs)
chr7 (422-472)||(9038115-9038165)
chr7 (422-491)||(7244664-7244733)
chr7 (423-470)||(9050640-9050687)
chr7 (421-468)||(47130801-47130848)
chr7 (422-465)||(47303415-47303458)
chr7 (423-469)||(514773-514819)
chr7 (423-468)||(2825249-2825294)
[»] chr5 (8 HSPs)
chr5 (402-468)||(7674655-7674721)
chr5 (422-459)||(1465037-1465074)
chr5 (422-469)||(4014441-4014488)
chr5 (422-469)||(12425577-12425624)
chr5 (426-472)||(7319029-7319075)
chr5 (416-499)||(29116961-29117046)
chr5 (422-494)||(12242727-12242799)
chr5 (424-484)||(36774726-36774786)
[»] chr3 (5 HSPs)
chr3 (423-499)||(44284098-44284174)
chr3 (426-472)||(2719471-2719517)
chr3 (422-468)||(21367674-21367720)
chr3 (422-459)||(24085355-24085392)
chr3 (400-469)||(52619009-52619078)
[»] scaffold0020 (1 HSPs)
scaffold0020 (401-468)||(159969-160036)
[»] chr6 (7 HSPs)
chr6 (406-493)||(2205591-2205678)
chr6 (422-467)||(835266-835311)
chr6 (461-493)||(323916-323948)
chr6 (454-494)||(4322834-4322874)
chr6 (402-474)||(4324450-4324522)
chr6 (404-472)||(8364975-8365043)
chr6 (416-468)||(26694885-26694937)
[»] chr4 (2 HSPs)
chr4 (423-468)||(9841073-9841116)
chr4 (423-469)||(16199999-16200045)


Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 36 - 543
Target Start/End: Complemental strand, 5426513 - 5426006
Alignment:
Q  36 aattataaagtttcaatttttaacttaatcaaatcatgggtatttcaatttcaaaattagggtttcatcaaattcttttttattgttatattgtgaatat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5426513 aattataaagtttcaatttttaacttaatcaaatcatgggtatttcaatttcaaaattagggtttcatcaaattcttttttattgttatattgtgaatat 5426414  T
Q  136 aataggaagggctggtgttcctatggaggttatgggtttgatgcttggagaatttgtggatgagtatacagttcgtgttgttgatgtgtttgcaatgcca 235  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5426413 aataggaagggctggggttcctatggaggttatgggtttgatgcttggagaatttgtggatgagtatacagttcgtgttgttgacgtgtttgcaatgcca 5426314  T
Q  236 caaagtggaactggtgttagtgttgaagctgttgatcatgtttttcagactaatatgcttgatatgctcaaacaaactggaaggtattttgtttttcaga 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5426313 caaagtggaactggtgttagtgttgaagctgttgatcatgtttttcagactaatatgcttgatatgctcaaacaaactggaaggtattttgtttttcaga 5426214  T
Q  336 atttcattacgtgttctttgttttttgcttagatttgtgaatgtagggttggtatagtgaacttatttatgacatgtttgtaaacagttttcagcttatt 435  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5426213 attttattacgtgttctttgttttttgcttagacttgtgaatgtagggttggtatagtgaacttatttatgacatgttcgtaaacagttttcagcttatt 5426114  T
Q  436 ttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaagacctcctccgtcctatcttaactgagccttttgtt 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  5426113 ttcacaagtcctccagaatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaagacctcctctgtcctatcttaactgatccttttgtt 5426014  T
Q  536 catctcac 543  Q
    ||| ||||    
T  5426013 catttcac 5426006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 466
Target Start/End: Complemental strand, 680576 - 680512
Alignment:
Q  402 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaa 466  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||||    
T  680576 ttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaa 680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 3611285 - 3611231
Alignment:
Q  416 taaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagt 470  Q
    ||||| ||||| |||||||||||| |||| ||||| |||||||||||||||||||    
T  3611285 taaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacagt 3611231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 42621375 - 42621439
Alignment:
Q  405 tgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    |||||||| |||||   ||||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  42621375 tgacatgtctgtaagttgttttcagcttattttcacaagttctccagaataacttatgaaaacag 42621439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 12464491 - 12464534
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaa 466  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaa 12464534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 1893299 - 1893345
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    |||||||||||||||||||||| ||||| ||||||||  ||||||||    
T  1893299 ttttcagcttattttcacaagttctccaagatagcttccgaaaacag 1893345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 5759594 - 5759639
Alignment:
Q  424 tttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    |||||||||||||||||||  ||||||| ||||||| |||||||||    
T  5759594 tttcagcttattttcacaaaccctccagaatagcttatgaaaacag 5759639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 494
Target Start/End: Complemental strand, 14209269 - 14209236
Alignment:
Q  461 tgaaaacagtttgaatttattttaacttttgtta 494  Q
    |||||||||||||||||||||||| |||||||||    
T  14209269 tgaaaacagtttgaatttattttatcttttgtta 14209236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 472
Target Start/End: Original strand, 33319830 - 33319879
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    ||||||||||||||||| |||| ||||| ||||| || ||||||||||||    
T  33319830 ttttcagcttattttcataagttctccaagatagtttatgaaaacagttt 33319879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 32098348 - 32098424
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 499  Q
    |||||||||||||| |  |||| |||||  ||| ||| |||||||| ||||| ||||||||| ||||||||| ||||    
T  32098348 ttttcagcttatttccgtaagttctccataataacttatgaaaacactttgactttattttatcttttgttatagaa 32098424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 138 - 325
Target Start/End: Complemental strand, 6085920 - 6085733
Alignment:
Q  138 taggaagggctggtgttcctatggaggttatgggtttgatgcttggagaatttgtggatgagtatacagttcgtgttgttgatgtgtttgcaatgccaca 237  Q
    |||| ||||||||||| |||||||| ||||||||||||||| | || || ||||||||||||||||| ||| | ||||||||||| ||||| ||||| ||    
T  6085920 taggtagggctggtgtacctatggaagttatgggtttgatgttgggggagtttgtggatgagtatactgttagggttgttgatgtttttgctatgcctca 6085821  T
Q  238 aagtggaactggtgttagtgttgaagctgttgatcatgtttttcagactaatatgcttgatatgctcaaacaaactggaaggtatttt 325  Q
     ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||    
T  6085820 gagtggtactggtgttagtgttgaagctgttgatcatgtttttcaaactaacatgcttgatatgttgaaacaaactggaaggtatttt 6085733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 489240 - 489193
Alignment:
Q  425 ttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    |||||||||||||||||||| || ||  ||||||||||||||||||||    
T  489240 ttcagcttattttcacaagttctgcacaatagcttgtgaaaacagttt 489193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 7137016 - 7137062
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    ||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacag 7137062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 10799537 - 10799487
Alignment:
Q  400 atttatgacatgtttgtaaacagttttcagcttattttcacaagtcctcca 450  Q
    ||||||||||||||| ||| | |||||||||||||||||| |||| |||||    
T  10799537 atttatgacatgtttataatctgttttcagcttattttcataagttctcca 10799487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 499
Target Start/End: Original strand, 26293170 - 26293222
Alignment:
Q  447 tccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 499  Q
    ||||||||||||| |||||||| ||||| |||||||||  |||||||| ||||    
T  26293170 tccaggatagcttatgaaaacaatttgactttattttactttttgttatagaa 26293222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 37842354 - 37842418
Alignment:
Q  404 atgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    ||||||||||  ||| |||||||||||||||||| | |||| || || |||||||| ||||||||    
T  37842354 atgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaaca 37842418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 471
Target Start/End: Original strand, 41195211 - 41195259
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtt 471  Q
    ||||||||||||||||| |||| ||||| ||||| || |||||||||||    
T  41195211 ttttcagcttattttcataagttctccaagatagtttatgaaaacagtt 41195259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 402 - 494
Target Start/End: Complemental strand, 20672823 - 20672731
Alignment:
Q  402 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtta 494  Q
    ||||||||||||  ||| | |||||||||||||||||| |||  |||||||||||||| | |||||||||||| ||||||||| |||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacagtttgactttattttatcttttgtta 20672731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 499
Target Start/End: Original strand, 39392699 - 39392777
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaa-acagtttgaatttattttaacttttgttaaagaa 499  Q
    |||||||||||||||||| |||    ||| |||||| ||||||| ||||||||| ||||||||| ||||||||| ||||    
T  39392699 gttttcagcttattttcataagcttgccaagatagcctgtgaaacacagtttgactttattttatcttttgttatagaa 39392777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 30947490 - 30947542
Alignment:
Q  430 cttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattt 482  Q
    |||||||||| || || ||||||||||||| ||||||| |||||| |||||||    
T  30947490 cttattttcataattcatccaggatagcttatgaaaacggtttgattttattt 30947542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 2923 - 2972
Alignment:
Q  211 tgttgttgatgtgtttgcaatgccacaaagtggaactggtgttagtgttg 260  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2923 tgttgttgttgtgtttgcaatgccacaaagtggaactggtgttagtgttg 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 9038165 - 9038115
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||||||||||    
T  9038165 gttttcagcttattttcacaagttctccatgatagtttatgaaaacagttt 9038115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 491
Target Start/End: Complemental strand, 7244733 - 7244664
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttg 491  Q
    |||||||||||||||||| |||  |||||  ||||||| |||||||||||||| ||| ||||| ||||||    
T  7244733 gttttcagcttattttcataagctctccaatatagcttatgaaaacagtttgactttcttttatcttttg 7244664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 470
Target Start/End: Complemental strand, 9050687 - 9050640
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagt 470  Q
    |||||||||||||||||||||| ||||| ||||| || ||||||||||    
T  9050687 ttttcagcttattttcacaagttctccaagatagtttatgaaaacagt 9050640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 468
Target Start/End: Original strand, 47130801 - 47130848
Alignment:
Q  421 agttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    |||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  47130801 agttttcaacttattttcacaagttctccaagatagcttatgaaaaca 47130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 47303458 - 47303415
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaa 465  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||    
T  47303458 gttttcaacttattttcacaagttctccaggattgcttgtgaaa 47303415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 514819 - 514773
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||||    
T  514819 ttttcagcttattttgacaagctctccaggatagcttatgaaaacag 514773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 2825249 - 2825294
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    |||||||||||||| || |||| ||| |||||||||||||||||||    
T  2825249 ttttcagcttatttccataagttctctaggatagcttgtgaaaaca 2825294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 468
Target Start/End: Complemental strand, 7674721 - 7674655
Alignment:
Q  402 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    ||||||||||||| |||   ||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  7674721 ttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 1465037 - 1465074
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagctt 459  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1465037 gttttcagcttattttcacaagtcctccaagatagctt 1465074  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Original strand, 4014441 - 4014488
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    |||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  4014441 gttttcagcttattttcataagttctccaagatagcttatgaaaacag 4014488  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 12425624 - 12425577
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    ||||||| |||||||||| |||| ||||| ||||||||||||||||||    
T  12425624 gttttcaacttattttcataagttctccaagatagcttgtgaaaacag 12425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 7319029 - 7319075
Alignment:
Q  426 tcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    |||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  7319029 tcagcttattttcataagttctccaagatagcttatgaaaacagttt 7319075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 29116961 - 29117046
Alignment:
Q  416 taaacagttttcagcttattttcacaagtcctccaggatagcttgt--gaaaacagtttgaatttattttaacttttgttaaagaa 499  Q
    ||||| ||||||||||||||| || |||   | ||||||||||| |  ||||||||||||| ||||||||| ||||||||| ||||    
T  29116961 taaactgttttcagcttatttgcataagcttttcaggatagcttatacgaaaacagtttgactttattttatcttttgttatagaa 29117046  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 12242727 - 12242799
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtta 494  Q
    |||||||||||| || || |||  ||||| |||||||| |||||||| ||||| | ||||||| |||||||||    
T  12242727 gttttcagcttacttccataagctctccaagatagcttatgaaaacaatttgactctattttatcttttgtta 12242799  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 36774726 - 36774786
Alignment:
Q  424 tttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttatttta 484  Q
    ||||||||||||| || |||  |||||||||||||| | |||||||||||| ||| |||||    
T  36774726 tttcagcttatttccataagctctccaggatagcttataaaaacagtttgactttgtttta 36774786  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 499
Target Start/End: Original strand, 44284098 - 44284174
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgttaaagaa 499  Q
    ||||||||||||||  | |||  |||||||||||||| |||||||||||||| ||| |||||  |||||||| ||||    
T  44284098 ttttcagcttatttctataagctctccaggatagcttatgaaaacagtttgactttgttttattttttgttatagaa 44284174  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 2719517 - 2719471
Alignment:
Q  426 tcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    |||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  2719517 tcagcttattttcataagttctccaagatagcttatgaaaacagttt 2719471  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 468
Target Start/End: Complemental strand, 21367720 - 21367674
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  21367720 gttttcagcttattttcataagttctccaagatagcttatgaaaaca 21367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 24085355 - 24085392
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagctt 459  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  24085355 gttttcagcttattttcacaagttctccaagatagctt 24085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 52619078 - 52619009
Alignment:
Q  400 atttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    ||||||||||||||  ||| |  |||||| ||||||||||||||  || || ||||||||||||||||||    
T  52619078 atttatgacatgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacag 52619009  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 159969 - 160036
Alignment:
Q  401 tttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    |||||||||||| | ||| ||||||||||||||||| ||||||  ||  |||||||||| ||||||||    
T  159969 tttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaaca 160036  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 2205591 - 2205678
Alignment:
Q  406 gacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttgaatttattttaacttttgtt 493  Q
    ||||||||| |||||  | |||||||||||| || |||  ||||| |||||||| |||||||| ||||| ||| ||||| ||||||||    
T  2205591 gacatgtttataaactatattcagcttatttccataagctctccaagatagcttatgaaaacaatttgactttgttttatcttttgtt 2205678  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 467
Target Start/End: Original strand, 835266 - 835311
Alignment:
Q  422 gttttcagcttattttcacaagtcctccaggatagcttgtgaaaac 467  Q
    |||||||||||||||||| |||| ||||| |||||||| |||||||    
T  835266 gttttcagcttattttcataagttctccaagatagcttatgaaaac 835311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 493
Target Start/End: Complemental strand, 323948 - 323916
Alignment:
Q  461 tgaaaacagtttgaatttattttaacttttgtt 493  Q
    |||||||||||||||||| ||||||||||||||    
T  323948 tgaaaacagtttgaatttgttttaacttttgtt 323916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 4322834 - 4322874
Alignment:
Q  454 tagcttgtgaaaacagtttgaatttattttaacttttgtta 494  Q
    |||||| |||||| ||| |||||||||||||||||||||||    
T  4322834 tagcttatgaaaatagtatgaatttattttaacttttgtta 4322874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 4324450 - 4324522
Alignment:
Q  402 ttatgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagtttga 474  Q
    |||||||||||   ||||| | ||| ||||||||| || ||||  ||||||||||||| ||||||||||||||    
T  4324450 ttatgacatgtccctaaactgcttttagcttatttgcataagttttccaggatagcttatgaaaacagtttga 4324522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 472
Target Start/End: Original strand, 8364975 - 8365043
Alignment:
Q  404 atgacatgtttgtaaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaacagttt 472  Q
    |||||||||||  || | ||||||||||||||||||  ||| | ||| |||||||| ||||||||||||    
T  8364975 atgacatgtttacaagctgttttcagcttattttcatcagttcaccatgatagcttatgaaaacagttt 8365043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 26694937 - 26694885
Alignment:
Q  416 taaacagttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    |||||||||||||||||||||||| |||| || || ||||| || ||||||||    
T  26694937 taaacagttttcagcttattttcataagttcttcaagatagtttatgaaaaca 26694885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 9841116 - 9841073
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaaca 468  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  9841116 ttttcagcttattttcacaagt--tccaggatagcttatgaaaaca 9841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Original strand, 16199999 - 16200045
Alignment:
Q  423 ttttcagcttattttcacaagtcctccaggatagcttgtgaaaacag 469  Q
    |||| |||||||||||| |||||||||| |||||||| |||||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagcttatgaaaacag 16200045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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