View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_high_8 (Length: 540)
Name: NF11218_high_8
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 6540387 - 6540845
Alignment:
| Q |
1 |
ctattttggttgtaattaaataattttatannnnnnnacctttaattgatgagtatttactaaaatgaataacatggtaacatttt-ttatacaagcagt |
99 |
Q |
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| T |
6540387 |
ctattttggttgtaattaaataattttttatttttttacctttaattgatgagtatttactaaaatgaatgacatggtaacatttttttatacaagcagt |
6540486 |
T |
|
| Q |
100 |
gttctaagggatccaaataactgactgtagttctctctcatgttgcaagaaatttgtattgtttatataacggactagaaaagagaacaatatccgattt |
199 |
Q |
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| T |
6540487 |
gttctaagggatccaaataactgactgtagctctctctcatgttgcaagaaatttgtattgtttatataacggactaaaaaagagaacaatatccgattt |
6540586 |
T |
|
| Q |
200 |
aaatgttaatggactagaaaacaaacgctcaaaaagttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggttattcctaggg |
299 |
Q |
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| T |
6540587 |
atatgttaatggactagaaaacaaacgctcaaaaggttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggttattcttaggg |
6540686 |
T |
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| Q |
300 |
tatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaagttggctgcacctttcaaagtctctgaggatctgtttttgaagagatatgt |
399 |
Q |
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| T |
6540687 |
catctttcttgaaatttcttgtgtccaaaggtttgattaaggatgctaaattggcttcatctttccaactttatgagtgtttgtttttcaagaagttcgt |
6540786 |
T |
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| Q |
400 |
gaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
458 |
Q |
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| T |
6540787 |
gaattgctttgaggaagaagcttctcagctgttgaagttgtatgaagagaaaatagatg |
6540845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 261 - 532
Target Start/End: Original strand, 6534291 - 6534562
Alignment:
| Q |
261 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaagttggctgcacc |
360 |
Q |
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| T |
6534291 |
ttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacc |
6534390 |
T |
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| Q |
361 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatgct |
460 |
Q |
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| T |
6534391 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgaggaagaagcatctcagctgttgaagttgtatgaagagaaaagagatgct |
6534490 |
T |
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| Q |
461 |
tcaactttcaaataaggttttgaaaaaagattcacagccacgatcttggaagcaacacaaagggtctctgct |
532 |
Q |
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| T |
6534491 |
tcaactttcaaataaggttttgaaaaaagattcgcagccacgatcttggaagcaacacaaagggtctctgct |
6534562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 261 - 458
Target Start/End: Original strand, 6543040 - 6543237
Alignment:
| Q |
261 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaagttggctgcacc |
360 |
Q |
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|||||||| |||||||||||||||||||||||||||| | | | ||||||||||| |||| |||||||||||||||||||||||||| ||||||||| | |
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| T |
6543040 |
ttcttttgttgagtcttgagaaaagggttattcctagagcttttgtcttgaaatttcttgaatccaaaggtttgattaaggatgctaaattggctgcagc |
6543139 |
T |
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| Q |
361 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgacgaagaagcatctcagctgttgaagttgtatgaagagaaaagagatg |
458 |
Q |
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| T |
6543140 |
tttcaaagtttctgaggatgtgtttttgaagagatttgtgacttgctacgaggaagaagcttctcaactgttgaagttgtatgaagagaaaaaagatg |
6543237 |
T |
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