View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_10 (Length: 539)
Name: NF11218_low_10
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 90 - 355
Target Start/End: Original strand, 10167523 - 10167788
Alignment:
| Q |
90 |
aaactcaatgtaactgcttgaaactattcaatcttccataacccttttaacaaaagcttcaaactttacactctcaattcaatttcaaacacacccacaa |
189 |
Q |
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| T |
10167523 |
aaactcaatgtaactgcttgaaactattcaatcttccataacccttttaacaaaagcttcaaactttacactctcaattcaattacaaacacatccacaa |
10167622 |
T |
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| Q |
190 |
caataactcaaactgggtcatctttattttccccaaagtgaataggatctgaacaatgatgggggttagaaacattgtcttgttattgctttgtattact |
289 |
Q |
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| T |
10167623 |
caataactcaaactgggtcatctttattttccccaaagtgaataggatctgaacaatgatgggggttagaaacattgtcttgttattgctttgtattact |
10167722 |
T |
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| Q |
290 |
gttgttgctcctattgttctttacactgatcgtcttggttcctttgaatcttcaccctccagtgag |
355 |
Q |
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| T |
10167723 |
gttgttgctcctattgttctttacactgatcgtcttggttcctttgaatcttcaccctccagtgag |
10167788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 443 - 534
Target Start/End: Original strand, 10167881 - 10167973
Alignment:
| Q |
443 |
aatgtgtttt-cagctaaacaagagtttattgaagaagttactgttttggtaagtgattatttgttaatacccttcagtgattctctgcttct |
534 |
Q |
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| T |
10167881 |
aatgtgttttgcagctaaacaagagtttattgaagaagttactgttttggtaagtgattatttgttaatgcccttcagtgattctctggttct |
10167973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10167463 - 10167508
Alignment:
| Q |
18 |
aatttcacaaacccatcaacaaaaatcgcatctttttcataaccct |
63 |
Q |
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| T |
10167463 |
aatttcacaaacccatcaacataaatcgtatctttttcataaccct |
10167508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 39186912 - 39186774
Alignment:
| Q |
90 |
aaactcaatgtaactgcttgaaactattcaatcttccataacccttttaacaaaagcttcaaactttacactctcaattcaatttcaaacacacccacaa |
189 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
39186912 |
aaactcaatggaactgcttcaaactattcaatcttccataacccctttaacaaaagcttcaaactttacactctcgattcaatttcaaagacacccacaa |
39186813 |
T |
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| Q |
190 |
caataactcaaactgggtcatctttattttccccaaagt |
228 |
Q |
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| T |
39186812 |
gaataactcaaactgggttatctttattttccccaaagt |
39186774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 39186971 - 39186935
Alignment:
| Q |
18 |
aatttcacaaacccatcaacaaaaatcgcatcttttt |
54 |
Q |
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|||||| ||||||||||||||||| |||||||||||| |
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| T |
39186971 |
aatttctcaaacccatcaacaaaattcgcatcttttt |
39186935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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