View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_12 (Length: 533)
Name: NF11218_low_12
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 44611702 - 44611193
Alignment:
| Q |
19 |
atagaatccattccttctaatacctgcttctctgacaggagggaatcaggatcctctaaagtataccttgaacataggtgtgatggggcttccagctgga |
118 |
Q |
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| T |
44611702 |
atagaatccattccttcaaatacctgcttctctgacaggagggaatcaggatcctctaaagtgtaccttgaacataggtgtgatggggcttccagctgga |
44611603 |
T |
|
| Q |
119 |
actttggttctatacttgtgtgaaccaagaagaaaaactggaatggagagcaatattgaagcagttgatacacctaaaccccactgccatcctttgttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44611602 |
actttggttctatacttgtgtgaaccaagaagaaaaactggaatggagagcaatattgaagcagttgatacacctaaaccccactgccatcctttgttgt |
44611503 |
T |
|
| Q |
219 |
cttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaaattcagaccttttctttcttccttctgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44611502 |
cttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaaattcagaccttttctttcttccttctgg |
44611403 |
T |
|
| Q |
319 |
tgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccacaagatagaggcctgcaaatagcatagct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44611402 |
tgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccacaagatagaggcctgcaaatagcatagct |
44611303 |
T |
|
| Q |
419 |
gcttttccaccttgaactgtcttgcttaaactgttggtgctccccataatacagtttggtggtatgtgagcttgtatagtaagcactagtagaccctgtt |
518 |
Q |
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| T |
44611302 |
gcttttccaccttgaactgtcttgcataaattgttggtgctccccataacacagtttggtggtatgtgagcttgtatagtaagcactagtagaccctgtt |
44611203 |
T |
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| Q |
519 |
catctcactc |
528 |
Q |
| |
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||||||||| |
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| T |
44611202 |
gatctcactc |
44611193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 194 - 429
Target Start/End: Complemental strand, 16828610 - 16828375
Alignment:
| Q |
194 |
aaaccccactgccatcctttgttgtcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaaatt |
293 |
Q |
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|||||||| | ||| ||||| || ||||||| ||| || |||||||||||||||| | ||||||||||| || | || ||||||||||| || || |
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| T |
16828610 |
aaaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaag |
16828511 |
T |
|
| Q |
294 |
cagaccttttctttcttccttctggtgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccacaag |
393 |
Q |
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| T |
16828510 |
ttgatctttgcttccttccatttggtgtagcttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactag |
16828411 |
T |
|
| Q |
394 |
atagaggcctgcaaatagcatagctgcttttccacc |
429 |
Q |
| |
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||| || || ||||||| ||| |||||||||||||| |
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| T |
16828410 |
atatagaccagcaaataacattgctgcttttccacc |
16828375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 25171801 - 25171871
Alignment:
| Q |
218 |
tcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaa |
288 |
Q |
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|||||||||||||| |||||||||||||||| | ||||||||||| | ||| |||| ||||||||||| |
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| T |
25171801 |
tcttcaatccacacaacaaaagtaactgcaataagtgcaccacatgctaagctaaagatgaagtagttaaa |
25171871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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