View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_15 (Length: 460)
Name: NF11218_low_15
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_15 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 2410815 - 2410368
Alignment:
| Q |
8 |
ataatatgttcaaaggggagtgattaataataatgatcatcagaatgaatgaagatatgacttgactttattacggttgattcccaatctctttcgaatc |
107 |
Q |
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| T |
2410815 |
ataatatgttcaaaggggagtgattaataataatgatcatcagaatgaatgaagatatgactcgattttattacggttgatccccgatctctttcgaagc |
2410716 |
T |
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| Q |
108 |
aactcttgcattttggtt------------ttacaaagcaatctggtttggctctaaacaatatttggttttattgtgtttgtgtttgagtcatttgaaa |
195 |
Q |
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| T |
2410715 |
aactcttgcattttggttgtttaggtcgttttacaaagcaatctggtttggttctaaacaatatttggttttattgtgtttgtgtttgagtcatttgaaa |
2410616 |
T |
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| Q |
196 |
agnnnnnnnnnnccttatttttaacataaggagaaaaatttaaagtctttatatgacaatattaagttttaatctttctgagggttgaaagctagataca |
295 |
Q |
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| T |
2410615 |
agaaaaaaaa---cttatttttaacagaaggagaaaaatttaaagtctttatatgacaacattaagttttagtctttcttatggttgaaagctagataca |
2410519 |
T |
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| Q |
296 |
caactttcattttcgactatcactattgatggtgtaatcctctgtaatgtttgtcatcaattttatagcttgtttcttttttgttttcgattttgaactt |
395 |
Q |
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|||||||| |||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2410518 |
caactttcgtttttgactatcactattgatggtttaatcctccgtagtgtttgtcatcaattttatagcttatttcttttttgttttcgattttgaactt |
2410419 |
T |
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| Q |
396 |
taacgttgtcaactctctttagtccaattctgacacattttatgcttgaag |
446 |
Q |
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| T |
2410418 |
taacattgtcaactctctttagtccgattctgacacattttacgcttgaag |
2410368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 8821604 - 8821509
Alignment:
| Q |
213 |
tttttaacataaggagaaaaatttaaagtctttatatgacaatattaagttttaatctttctgagggttgaaagctagatacacaactttcattttc |
309 |
Q |
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| T |
8821604 |
ttttcaacataaggaggaaaatttgaaatcgt-atgtgacaaaattaagtttcagtcttaccggtggttgaaagcgagatacacaacttttattttc |
8821509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 148780 - 148733
Alignment:
| Q |
278 |
ggttgaaagctagatacacaactttcattttcgactatcactattgat |
325 |
Q |
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| T |
148780 |
ggttgaaagcgagataaacaactttcgttttcgactatcactattgat |
148733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 27832149 - 27832219
Alignment:
| Q |
305 |
ttttcgactatcactattgatggtgtaatcctctgtaatgtttgtcatcaattttatagcttgtttctttt |
375 |
Q |
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| T |
27832149 |
ttttcgactatcattattggtggcttaatactctccaatgtttgacatcagttttttagcttgtttctttt |
27832219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 7914148 - 7914213
Alignment:
| Q |
244 |
ttatatgacaatattaagttttaatctttctgagggttgaaagctagatacacaactttcattttc |
309 |
Q |
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| T |
7914148 |
ttatatgacaaaattaagcttcagtctttctggtagttgaaagcaagatacacaactttcgttttc |
7914213 |
T |
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