View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_16 (Length: 426)
Name: NF11218_low_16
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 28733139 - 28732746
Alignment:
| Q |
18 |
ttatttgcagcttccaattgcatttgagttgtaccaagtgtttccaatgcctgtgattcagattctctacaatggctcacctcatttttcatctttgcaa |
117 |
Q |
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| T |
28733139 |
ttatttgcagcttccaattgcatttgagttgtaccaactgtttccaatgcctgtgattcagattctctacaatggctcacctcatttttcatctttgcaa |
28733040 |
T |
|
| Q |
118 |
ttaaagagagtgtttcatcaagctccatcctcaagtcttgaatctcagcatcagctgactcagcattgtcaatccgggtagcttcggattcacgtgctct |
217 |
Q |
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| T |
28733039 |
ttaaagagagtgtttcatcaagctccatcctcaagtcttgaatctcagcatcagctgactcagcattgtcaatccgggtagcttcggattcacgtgctct |
28732940 |
T |
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| Q |
218 |
ttcaagttgcattttcagtttctggatttcattcattgcagatgctaaagcagctgagtccattgaatgctgtttctggacagcctctagttcagactgc |
317 |
Q |
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| T |
28732939 |
ttcaagttgcattttcagtttctggatttcattcattgcagatgctaaagcagctgagtccattgaatgctgtttctggacagcctctagttcagactgc |
28732840 |
T |
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| Q |
318 |
cattctcgatctcggtcctgagaaattttccttagttctagaattcgctcatcttcagaattggatagttccagaagttgccgctgtgattcct |
411 |
Q |
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| T |
28732839 |
cattctcgatctcggtcctgagaaattttccttagttcttgaattcgctcatcttcagaattggatagttccagaagttgccgctgtgattcct |
28732746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 356
Target Start/End: Original strand, 40584777 - 40584921
Alignment:
| Q |
212 |
tgctctttcaagttgcattttcagtttctggatttcattcattgcagatgctaaagcagctgagtccattgaatgctgtttctggacagcctctagttca |
311 |
Q |
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|||||||||||| || |||||| ||| || ||||||||||| ||||| | | ||| | ||| |||||||| || || || ||||||||||| |||||| |
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| T |
40584777 |
tgctctttcaagctgacttttcaatttatgtatttcattcatggcagacaccagagcggatgaatccattgagtgttgcttttggacagcctcaagttca |
40584876 |
T |
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| Q |
312 |
gactgccattctcgatctcggtcctgagaaattttccttagttct |
356 |
Q |
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| T |
40584877 |
gattgccatgcacgatctcgatcctgagatattttactgagttct |
40584921 |
T |
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