View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_19 (Length: 386)
Name: NF11218_low_19
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 48467211 - 48466858
Alignment:
| Q |
18 |
agaccatccatgttagaagttgattcgctgctcaagaatgaaagtgcatatgtcggtactccaaacgtgcctgctttttcgatgaaaaaacttgaagaag |
117 |
Q |
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| T |
48467211 |
agaccatccatgttagaagttgattcgctgctcaagaatgaaagtgcatatgtcggtactccaaacgtgcctgctttttcgatgaaaaaacttgaagaag |
48467112 |
T |
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| Q |
118 |
ataaggtggatacattaaaatctgggttcaaattctcttcaatcaatgatgttacaatttctcagatgctaccaagataatgttgtcgatatgcatattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48467111 |
ataaggtggatacattaaaatctgggttcaaattctcttcaatcaatgatgttacaatttctcaaatgctaccaagataatgttgtcgatatgcatattt |
48467012 |
T |
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| Q |
218 |
tagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatgctaatatgatgtgctcatcaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48467011 |
tagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatgctaatatgatgtgctcatcaccc |
48466912 |
T |
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| Q |
318 |
tgtttaagcattgatagtgtggaaattttgggactatatcaagcaatgtcacag |
371 |
Q |
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| T |
48466911 |
tgtttaagcattgataatgtggaaattttgggactatatcaagcaatgtcacag |
48466858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 48476167 - 48475891
Alignment:
| Q |
18 |
agaccatccatgttagaagttgattcgctgctcaagaatgaaagtgcatatgtcggtactccaaacgtgcctgctttttcgatgaaaaaacttgaagaag |
117 |
Q |
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| T |
48476167 |
agaccttccatgttagaagttgattcactaatcaagaatgaaggtaggccaattggtactcccaacatgcctgccttttcaatgaacaaacatgaagatg |
48476068 |
T |
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| Q |
118 |
ataaggtggatacattaaaatctgggttcaaattctcttcaatcaatgatgttacaatttctcagatgctaccaagataatgttgtcgatatgcatattt |
217 |
Q |
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|||||| |||||||| || ||||||||||| || | ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||| |
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| T |
48476067 |
ataagggagatacatttaactctgggttcaatttatattcaatcaatgatgttacaatttctcaaatgttaccaagataatggtgtcgataagcatattt |
48475968 |
T |
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| Q |
218 |
tagtagttaatgtgatatctagtttaggtcgtgtaagattttttagatcaaacagagaaaattaggttctatacatg |
294 |
Q |
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||| |||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||| ||||||| |
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| T |
48475967 |
tagctcttaatgtgatatctagtttaagtcgtgtaacacttcttagatcaaacagagaaaattaggtttaatacatg |
48475891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 48483429 - 48483243
Alignment:
| Q |
17 |
cagaccatccatgttagaagttgattcgctgctcaagaatgaaagtgcatatgtcggtactccaaacgtgcctgctttttcgatgaaaaaacttgaagaa |
116 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
48483429 |
cagaccttccatgttagaagttgattcattgctcaagaatgaaggtgcatatgttggtactccaaatgtgcccgctttttcgatgaaaaaacatgaagat |
48483330 |
T |
|
| Q |
117 |
gataaggtggatacattaaaatctgggttcaaattctcttcaatcaatgatgttacaatttctcagatgctaccaagataatgttgt |
203 |
Q |
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||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||| |
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| T |
48483329 |
gataagggagatacatctaactccgggttcaaattttcttcaatcaatgatgttacaatttctcaaatggtaccaagataattttgt |
48483243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 48482432 - 48482387
Alignment:
| Q |
154 |
cttcaatcaatgatgttacaatttctcagatgctaccaagataatg |
199 |
Q |
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|||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
48482432 |
cttcaatcaatgatgttacaatttctgaaatggtaccaagataatg |
48482387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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