View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11218_low_2 (Length: 730)

Name: NF11218_low_2
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11218_low_2
NF11218_low_2
[»] chr3 (12 HSPs)
chr3 (19-720)||(7033760-7034448)
chr3 (40-299)||(7029719-7029975)
chr3 (424-490)||(7119800-7119866)
chr3 (547-582)||(477091-477126)
chr3 (526-575)||(7119980-7120029)
chr3 (547-579)||(1205403-1205435)
chr3 (547-579)||(1303667-1303699)
chr3 (547-582)||(1187641-1187676)
chr3 (523-578)||(7127209-7127264)
chr3 (550-585)||(7179049-7179084)
chr3 (400-439)||(8032410-8032449)
chr3 (550-585)||(8399994-8400029)
[»] chr4 (5 HSPs)
chr4 (355-495)||(52187719-52187863)
chr4 (40-89)||(52187461-52187510)
chr4 (427-490)||(15581805-15581868)
chr4 (527-576)||(36590356-36590405)
chr4 (48-89)||(36629937-36629978)
[»] chr2 (3 HSPs)
chr2 (384-490)||(38990027-38990133)
chr2 (413-495)||(43863134-43863216)
chr2 (413-490)||(43866612-43866689)
[»] chr7 (6 HSPs)
chr7 (398-495)||(32414603-32414700)
chr7 (548-582)||(6845249-6845283)
chr7 (547-581)||(6849822-6849856)
chr7 (426-494)||(30597238-30597306)
chr7 (547-582)||(6890258-6890293)
chr7 (548-582)||(30597156-30597190)
[»] chr5 (3 HSPs)
chr5 (523-582)||(28092136-28092195)
chr5 (397-495)||(7022955-7023053)
chr5 (525-581)||(7023077-7023133)
[»] scaffold0438 (1 HSPs)
scaffold0438 (400-439)||(6268-6307)
[»] chr8 (5 HSPs)
chr8 (400-439)||(26291886-26291925)
chr8 (400-439)||(26305143-26305182)
chr8 (400-439)||(26338498-26338537)
chr8 (424-490)||(27700914-27700980)
chr8 (424-490)||(35336717-35336783)
[»] chr1 (1 HSPs)
chr1 (389-492)||(42601948-42602051)
[»] chr6 (2 HSPs)
chr6 (424-490)||(33839362-33839428)
chr6 (526-575)||(33839157-33839206)


Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Original strand, 7033760 - 7034448
Alignment:
Q  19 agtttaactatacttcagagttatttcggaattgagctatctgttccaagtcttcatacctttacttttactggttgcactattctgaataagatctatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7033760 agtttaactatacttcagagttatttcggaattgagctatctgttccaagtcttcatacctttacttttactggttgcactattccgaataagatctatg 7033859  T
Q  119 ggagcaagagcaacctctctactatcaagcatgtaaatattgatttagcaagtgattgggaatgggcgaagacttcatcggctctacttagatggctgtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||    
T  7033860 ggagcaagagcaacctctctactatcaagcatgtaaatattgatttaccaagtgtttgggaatcggcgaagacttcatcggctctacttagctggctgtc 7033959  T
Q  219 tgagtttgctgggatcgaatcattgactgtctctttagatgccctcaagggactttataggcatgtttggttttggcaagaaaagttccatttcattttc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033960 tgagtttgctgggatcgaatcattgactgtctctttagatgccctcaaggtactttataggcatgtttggttttggcaagaaaagttccatttcattttc 7034059  T
Q  319 actttaaattacaacaatattgtcttaatatgcttgctttttatattgtgtttataaattttatcaatacgacttgcattaaactgatcctaatacttcc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7034060 actttaaattacaacaatattgtcttaatatgcttgctttttatattgtgtttataaattttatcaatacgacttgcattaaactgatcctaatacttcc 7034159  T
Q  419 tgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagttactgttactgaaagtaggaaggttcgg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      ||||||||||||||||||||||||    
T  7034160 tgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgcataacttgaa------gttactgaaagtaggaaggttcgg 7034253  T
Q  519 acgctcatccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaaggttaacgtgataacttactctgatcataattcataactt 618  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  7034254 acgctcatcaatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaaggttaacgtgataacttactctg-------gtcataactt 7034346  T
Q  619 cctctgatgataacttactttttaaggtgaggtggtcattcaacttgttaatgtgagatctttttgtttagcaattttatgtttgcatacttctctgctt 718  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7034347 cctctggggataacttactttttaaggtgaggtggtcattcaacttgttaatgtgagatctttttgtttagcaattttatgtttgcatacttctctgttt 7034446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 7029719 - 7029975
Alignment:
Q  40 tatttcggaattgagctatctgttccaagtcttcatacctttacttttactggttgcactattctgaataagatctatgggagcaagagcaacctctcta 139  Q
    ||||| ||||||||||| |||| ||||||| ||||||||||| |||| ||  || | ||| ||  |||   | ||||||||||||||| ||| || |||     
T  7029719 tattttggaattgagctctctgctccaagtattcatacctttgctttcaccagtcgtactcttacgaa---gttctatgggagcaagaccaatctttctt 7029815  T
Q  140 ctatcaagcatgtaaatattgatttagcaagtgattgggaatgggcgaagacttcatcggctctacttagatggctgtctgagtttgctgggatcgaatc 239  Q
    ||||||| ||||||| |||| ||||||||  |  |||||| | ||| |||||||||| || |||||| || ||||||  ||| |||||| | || |||||    
T  7029816 ctatcaaacatgtaagtattaatttagcacatctttgggattcggcaaagacttcattggttctactcagctggctggttgaatttgctagtattgaatc 7029915  T
Q  240 attgactgtctctttagatgccctcaagggactttataggcatgtttggttttggcaaga 299  Q
    |||||  ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  7029916 attgatcgtctctttagaggccctcaaggtactttattggcatgtttggttttggcaaga 7029975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 7119800 - 7119866
Alignment:
Q  424 gcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    ||||||||||| ||||||||||||||  ||| ||||||| |||| |||||||||| |||||||||||    
T  7119800 gcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagt 7119866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 547 - 582
Target Start/End: Original strand, 477091 - 477126
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    ||||||||||||||||||||||||||||||||||||    
T  477091 gactttttgcttcaaaactcaccctcagcaaaggtt 477126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 7119980 - 7120029
Alignment:
Q  526 tccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagc 575  Q
    |||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  7119980 tccatacctgatggaatagtcgactttttgcttcaaaactcaccttcagc 7120029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 1205403 - 1205435
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaag 579  Q
    |||||||||||||||||||||||||||||||||    
T  1205403 gactttttgcttcaaaactcaccctcagcaaag 1205435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 1303699 - 1303667
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaag 579  Q
    |||||||||||||||||||||||||||||||||    
T  1303699 gactttttgcttcaaaactcaccctcagcaaag 1303667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 582
Target Start/End: Original strand, 1187641 - 1187676
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    |||||||||||||||||||||||||| |||||||||    
T  1187641 gactttttgcttcaaaactcaccctcggcaaaggtt 1187676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 578
Target Start/End: Original strand, 7127209 - 7127264
Alignment:
Q  523 tcatccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaa 578  Q
    ||||||||||||| | |||||||  |||||||||||||||||||||| || |||||    
T  7127209 tcatccatacctgatggaatagtttactttttgcttcaaaactcaccttctgcaaa 7127264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 585
Target Start/End: Original strand, 7179049 - 7179084
Alignment:
Q  550 tttttgcttcaaaactcaccctcagcaaaggttaac 585  Q
    |||||||||||||||||||| |||||||||||||||    
T  7179049 tttttgcttcaaaactcaccatcagcaaaggttaac 7179084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 8032449 - 8032410
Alignment:
Q  400 aactgatcctaatacttcctgatggcttaggttctttcct 439  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  8032449 aactgatcctaatacttcatgattgcttaggttctttcct 8032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 585
Target Start/End: Complemental strand, 8400029 - 8399994
Alignment:
Q  550 tttttgcttcaaaactcaccctcagcaaaggttaac 585  Q
    |||||||||||||||||||| |||||||||||||||    
T  8400029 tttttgcttcaaaactcaccatcagcaaaggttaac 8399994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 355 - 495
Target Start/End: Original strand, 52187719 - 52187863
Alignment:
Q  355 ctttttatattgtgtttataaatttt-atcaa---tacgacttgcattaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaa 450  Q
    ||||||||||||| ||||||| |||| |||||   || ||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||     
T  52187719 ctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgat 52187818  T
Q  451 ctatcgaaggttgagcttccttccttgtataacttgaagttactg 495  Q
     ||| |||||||||| | | |||||||| || |||||||| ||||    
T  52187819 ttattgaaggttgagttccattccttgtgtaccttgaagtcactg 52187863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 52187461 - 52187510
Alignment:
Q  40 tatttcggaattgagctatctgttccaagtcttcatacctttacttttac 89  Q
    ||||| ||||||||||||| || ||||||||||||||||||| |||||||    
T  52187461 tattttggaattgagctatatgctccaagtcttcatacctttgcttttac 52187510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 15581868 - 15581805
Alignment:
Q  427 taggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    ||||||||||||||||||||||| || | ||||| ||||||  |||||||| ||| ||||||||    
T  15581868 taggttctttccttagttcctgatcttttgaaggatgagctatcttccttgcatagcttgaagt 15581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 576
Target Start/End: Complemental strand, 36590405 - 36590356
Alignment:
Q  527 ccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagca 576  Q
    ||||||||| | ||||||| ||||||||| ||||||||||||| ||||||    
T  36590405 ccatacctgatggaatagtggactttttgattcaaaactcaccgtcagca 36590356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 36629937 - 36629978
Alignment:
Q  48 aattgagctatctgttccaagtcttcatacctttacttttac 89  Q
    |||||||||||||||||||||||||  |||||| ||||||||    
T  36629937 aattgagctatctgttccaagtctttgtaccttcacttttac 36629978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 384 - 490
Target Start/End: Original strand, 38990027 - 38990133
Alignment:
Q  384 aatacgacttgcattaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataac 483  Q
    |||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||  ||| ||||| |||||| | | |||||||||||    
T  38990027 aatatgacttgcattaaactgatcgtaatacttcctgattgcttaggttctttctttatttcctgatttattgaaggctgagctccatcccttgtataac 38990126  T
Q  484 ttgaagt 490  Q
    |||||||    
T  38990127 ttgaagt 38990133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 43863216 - 43863134
Alignment:
Q  413 acttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagttactg 495  Q
    |||||||||| |||||||||||||||||||||| ||   ||| |||||| ||||| |||||||||| ||||||||||| ||||    
T  43863216 acttcctgattgcttaggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtcactg 43863134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 413 - 490
Target Start/End: Complemental strand, 43866689 - 43866612
Alignment:
Q  413 acttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    |||||||||| |||||||| ||||||||||||| |||  ||| |||||||||| | |||||||||| |||||||||||    
T  43866689 acttcctgattgcttaggtgctttccttagttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagt 43866612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 32414603 - 32414700
Alignment:
Q  398 taaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagttactg 495  Q
    |||| |||||||||| ||||||||| | ||||||||||||||| ||||||||  ||| ||||||  || | |||||||||| ||||||||||| ||||    
T  32414603 taaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactg 32414700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 582
Target Start/End: Original strand, 6845249 - 6845283
Alignment:
Q  548 actttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    |||||||||||||||||||||||||||||||||||    
T  6845249 actttttgcttcaaaactcaccctcagcaaaggtt 6845283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 581
Target Start/End: Original strand, 6849822 - 6849856
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaaggt 581  Q
    |||||||||||||||||||||||||||||||||||    
T  6849822 gactttttgcttcaaaactcaccctcagcaaaggt 6849856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 494
Target Start/End: Complemental strand, 30597306 - 30597238
Alignment:
Q  426 ttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagttact 494  Q
    ||||||||| || |||||||||||  ||| |||||||||| | | |||||||| |||||||||||||||    
T  30597306 ttaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagttact 30597238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 582
Target Start/End: Original strand, 6890258 - 6890293
Alignment:
Q  547 gactttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6890258 gactttttgcttcaaaactcaccctcaacaaaggtt 6890293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 582
Target Start/End: Complemental strand, 30597190 - 30597156
Alignment:
Q  548 actttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    ||||||| |||||||||||||||||||||||||||    
T  30597190 actttttacttcaaaactcaccctcagcaaaggtt 30597156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 582
Target Start/End: Original strand, 28092136 - 28092195
Alignment:
Q  523 tcatccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaaggtt 582  Q
    ||||||||||||| | ||||||| ||||||||| |||||||||||||||| |||||||||    
T  28092136 tcatccatacctgatggaatagtggactttttgattcaaaactcaccctcggcaaaggtt 28092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 7022955 - 7023053
Alignment:
Q  397 ttaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagttactg 495  Q
    |||||| ||||||||| | || ||||  ||||||||||||||||||||||| |  ||| || || |||||| |||||||||| ||||||||||| ||||    
T  7022955 ttaaaccgatcctaattcgtcttgatttcttaggttctttccttagttcctaacttattgatggctgagctcccttccttgtgtaacttgaagtcactg 7023053  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 581
Target Start/End: Original strand, 7023077 - 7023133
Alignment:
Q  525 atccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagcaaaggt 581  Q
    ||||||||||| | ||||||| ||||||||||||| ||| |||||||||||||||||    
T  7023077 atccatacctgatggaatagttgactttttgcttcgaaagtcaccctcagcaaaggt 7023133  T

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Target: scaffold0438 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 6268 - 6307
Alignment:
Q  400 aactgatcctaatacttcctgatggcttaggttctttcct 439  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  6268 aactgatcctaatacttcatgattgcttaggttctttcct 6307  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 26291886 - 26291925
Alignment:
Q  400 aactgatcctaatacttcctgatggcttaggttctttcct 439  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  26291886 aactgatcctaatacttcatgattgcttaggttctttcct 26291925  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 26305143 - 26305182
Alignment:
Q  400 aactgatcctaatacttcctgatggcttaggttctttcct 439  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  26305143 aactgatcctaatacttcatgattgcttaggttctttcct 26305182  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 439
Target Start/End: Original strand, 26338498 - 26338537
Alignment:
Q  400 aactgatcctaatacttcctgatggcttaggttctttcct 439  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  26338498 aactgatcctaatacttcatgattgcttaggttctttcct 26338537  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 27700980 - 27700914
Alignment:
Q  424 gcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    ||||||||||| ||| ||||||||||  ||| |||||||||| || ||||||| | |||||||||||    
T  27700980 gcttaggttctctccgtagttcctgatttattgaaggttgagttttcttccttatgtaacttgaagt 27700914  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 35336717 - 35336783
Alignment:
Q  424 gcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    ||||||||||| ||||||||||||||  ||| | ||||| |||| ||||| |||| |||||||||||    
T  35336717 gcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgtaacttgaagt 35336783  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 492
Target Start/End: Complemental strand, 42602051 - 42601948
Alignment:
Q  389 gacttgcattaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaa 488  Q
    ||||||||| |||||||||||||| |  ||| ||  ||||| |||| ||||||||||||||  ||| | ||||| ||||  |||| |||| |||||||||    
T  42602051 gacttgcataaaactgatcctaattcaccctcatttcttagattctctccttagttcctgatttattggaggttaagctcacttcgttgtgtaacttgaa 42601952  T
Q  489 gtta 492  Q
    ||||    
T  42601951 gtta 42601948  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 33839428 - 33839362
Alignment:
Q  424 gcttaggttctttccttagttcctgaactatcgaaggttgagcttccttccttgtataacttgaagt 490  Q
    |||||| |||| ||||||||||||||  ||| | ||||| |||||||||| |||| |||||||||||    
T  33839428 gcttagattctctccttagttcctgatttattggaggttaagcttccttctttgtgtaacttgaagt 33839362  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 33839206 - 33839157
Alignment:
Q  526 tccatacctggtcgaatagtagactttttgcttcaaaactcaccctcagc 575  Q
    |||||||||| | ||||||| ||||| ||||||||||||||||| |||||    
T  33839206 tccatacctgatggaatagtggacttcttgcttcaaaactcaccgtcagc 33839157  T

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