View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11218_low_21 (Length: 367)

Name: NF11218_low_21
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11218_low_21
NF11218_low_21
[»] chr3 (36 HSPs)
chr3 (112-356)||(54680613-54680857)
chr3 (155-356)||(54714682-54714881)
chr3 (1-136)||(13364839-13364974)
chr3 (1-137)||(36881277-36881411)
chr3 (1-133)||(19241814-19241946)
chr3 (1-132)||(198855-198986)
chr3 (1-132)||(46694256-46694387)
chr3 (3-133)||(29375137-29375267)
chr3 (1-133)||(3383075-3383207)
chr3 (1-132)||(23088077-23088208)
chr3 (1-134)||(43750135-43750268)
chr3 (28-125)||(32835129-32835226)
chr3 (17-133)||(13702768-13702884)
chr3 (54-132)||(27707363-27707441)
chr3 (79-137)||(19911504-19911562)
chr3 (79-134)||(12094580-12094635)
chr3 (1-80)||(19897073-19897152)
chr3 (47-133)||(37293436-37293522)
chr3 (1-73)||(37780996-37781068)
chr3 (47-115)||(48820444-48820512)
chr3 (79-133)||(44277455-44277509)
chr3 (91-133)||(19912174-19912216)
chr3 (91-133)||(38806341-38806383)
chr3 (89-135)||(48963153-48963199)
chr3 (47-125)||(53559802-53559880)
chr3 (4-81)||(1455297-1455374)
chr3 (79-132)||(38805245-38805298)
chr3 (104-135)||(21005290-21005321)
chr3 (104-135)||(27334728-27334759)
chr3 (104-135)||(39866138-39866169)
chr3 (79-133)||(4235750-4235803)
chr3 (207-291)||(54721659-54721741)
chr3 (91-132)||(12095423-12095464)
chr3 (91-132)||(44276775-44276816)
chr3 (107-135)||(27010471-27010499)
chr3 (1-105)||(54086581-54086684)
[»] chr8 (29 HSPs)
chr8 (1-132)||(11174369-11174500)
chr8 (1-133)||(2540077-2540209)
chr8 (1-133)||(40058449-40058581)
chr8 (1-132)||(3585451-3585582)
chr8 (1-132)||(37345571-37345702)
chr8 (1-133)||(11646471-11646603)
chr8 (1-132)||(43275545-43275674)
chr8 (1-132)||(7146913-7147044)
chr8 (1-135)||(40918877-40919009)
chr8 (1-125)||(30999669-30999791)
chr8 (1-132)||(36068080-36068211)
chr8 (1-132)||(27034997-27035127)
chr8 (1-132)||(20546435-20546564)
chr8 (1-133)||(28562420-28562553)
chr8 (1-84)||(28326803-28326883)
chr8 (1-74)||(13881100-13881174)
chr8 (79-135)||(41307961-41308017)
chr8 (79-134)||(8697898-8697953)
chr8 (79-132)||(45278701-45278754)
chr8 (79-133)||(10646591-10646645)
chr8 (20-133)||(28567918-28568032)
chr8 (20-133)||(28575511-28575625)
chr8 (4-130)||(35866616-35866742)
chr8 (79-132)||(40486453-40486506)
chr8 (1-84)||(37510314-37510397)
chr8 (91-133)||(41305761-41305803)
chr8 (1-73)||(10181003-10181074)
chr8 (104-132)||(36642093-36642121)
chr8 (107-135)||(40494621-40494649)
[»] chr7 (19 HSPs)
chr7 (1-134)||(10981506-10981639)
chr7 (1-133)||(27813810-27813942)
chr7 (1-132)||(40348960-40349091)
chr7 (1-130)||(36453270-36453399)
chr7 (4-132)||(47110451-47110577)
chr7 (1-132)||(25614499-25614628)
chr7 (1-84)||(3091565-3091648)
chr7 (1-84)||(7743543-7743625)
chr7 (3-135)||(16360381-16360511)
chr7 (79-133)||(25060133-25060187)
chr7 (79-134)||(2911548-2911603)
chr7 (4-82)||(16662146-16662222)
chr7 (4-82)||(17636506-17636582)
chr7 (1-72)||(27942185-27942256)
chr7 (1-82)||(37983206-37983283)
chr7 (1-74)||(3498900-3498973)
chr7 (6-66)||(27021566-27021624)
chr7 (107-135)||(2910856-2910884)
chr7 (113-141)||(42043888-42043916)
[»] chr6 (26 HSPs)
chr6 (1-134)||(1605577-1605710)
chr6 (1-134)||(29260190-29260323)
chr6 (1-125)||(30734629-30734753)
chr6 (1-132)||(8626482-8626613)
chr6 (1-133)||(13757207-13757339)
chr6 (1-134)||(7761299-7761430)
chr6 (4-133)||(15064843-15064972)
chr6 (1-117)||(31559882-31559998)
chr6 (1-132)||(8235624-8235755)
chr6 (1-137)||(17942438-17942576)
chr6 (1-132)||(4129435-4129558)
chr6 (17-126)||(30734772-30734879)
chr6 (1-81)||(21277580-21277659)
chr6 (2-84)||(3798151-3798233)
chr6 (79-133)||(19996715-19996769)
chr6 (91-136)||(19996318-19996363)
chr6 (207-291)||(5297812-5297894)
chr6 (5-81)||(11370635-11370711)
chr6 (1-133)||(14286988-14287119)
chr6 (94-136)||(17942682-17942724)
chr6 (13-74)||(33845443-33845502)
chr6 (104-132)||(6563226-6563254)
chr6 (107-135)||(18668925-18668953)
chr6 (107-135)||(20437014-20437042)
chr6 (107-135)||(24623938-24623966)
chr6 (104-132)||(24624175-24624203)
[»] scaffold1431 (1 HSPs)
scaffold1431 (1-137)||(45-181)
[»] chr4 (27 HSPs)
chr4 (1-133)||(21310424-21310556)
chr4 (1-133)||(25704650-25704782)
chr4 (1-133)||(14261043-14261175)
chr4 (1-133)||(24706393-24706525)
chr4 (1-133)||(12071560-12071692)
chr4 (1-133)||(22321413-22321545)
chr4 (1-132)||(34324728-34324860)
chr4 (1-133)||(40122631-40122763)
chr4 (1-133)||(44568836-44568968)
chr4 (1-133)||(21661681-21661813)
chr4 (1-133)||(21670445-21670577)
chr4 (1-125)||(50767871-50767995)
chr4 (4-132)||(20249162-20249289)
chr4 (1-130)||(31892240-31892365)
chr4 (12-102)||(1988065-1988155)
chr4 (1-137)||(6129094-6129230)
chr4 (1-84)||(20714494-20714577)
chr4 (3-132)||(26676714-26676843)
chr4 (1-81)||(32543532-32543611)
chr4 (9-72)||(34284171-34284234)
chr4 (1-105)||(19692750-19692854)
chr4 (1-105)||(19703335-19703439)
chr4 (47-84)||(48652268-48652305)
chr4 (1-60)||(21064834-21064891)
chr4 (1-64)||(18507410-18507472)
chr4 (104-133)||(12625485-12625514)
chr4 (107-135)||(47386523-47386551)
[»] chr2 (18 HSPs)
chr2 (1-133)||(3518907-3519039)
chr2 (1-136)||(23366785-23366920)
chr2 (5-132)||(37673887-37674014)
chr2 (1-132)||(39938170-39938301)
chr2 (1-132)||(1102503-1102634)
chr2 (4-133)||(12969888-12970017)
chr2 (1-104)||(1646317-1646418)
chr2 (1-55)||(22388281-22388335)
chr2 (10-84)||(35179090-35179164)
chr2 (79-132)||(34224378-34224431)
chr2 (4-84)||(19976380-19976459)
chr2 (1-73)||(14779838-14779908)
chr2 (1-81)||(32840318-32840401)
chr2 (1-84)||(18078104-18078187)
chr2 (5-74)||(39562037-39562104)
chr2 (1-58)||(24777741-24777798)
chr2 (104-132)||(2182960-2182988)
chr2 (1-41)||(4917853-4917893)
[»] chr1 (44 HSPs)
chr1 (1-133)||(40783803-40783935)
chr1 (1-132)||(321626-321757)
chr1 (1-132)||(23045425-23045556)
chr1 (1-132)||(284333-284464)
chr1 (1-135)||(23526237-23526371)
chr1 (4-132)||(24772054-24772182)
chr1 (4-131)||(27211113-27211240)
chr1 (1-132)||(47037998-47038127)
chr1 (1-125)||(46771644-46771768)
chr1 (4-104)||(33082773-33082873)
chr1 (1-117)||(52037268-52037382)
chr1 (4-82)||(1749357-1749435)
chr1 (24-132)||(51064925-51065033)
chr1 (79-134)||(3943058-3943113)
chr1 (3-132)||(40261419-40261549)
chr1 (4-81)||(1837978-1838053)
chr1 (79-133)||(9588669-9588723)
chr1 (79-132)||(41959078-41959131)
chr1 (1-84)||(52478016-52478097)
chr1 (17-84)||(3657125-3657192)
chr1 (4-84)||(31003935-31004012)
chr1 (91-133)||(44227847-44227889)
chr1 (4-73)||(7765072-7765141)
chr1 (79-132)||(13984991-13985044)
chr1 (1-82)||(27143157-27143239)
chr1 (91-133)||(41959809-41959851)
chr1 (89-135)||(44228238-44228284)
chr1 (91-132)||(3943763-3943804)
chr1 (24-73)||(18396754-18396803)
chr1 (7-72)||(40562733-40562797)
chr1 (1-84)||(34458869-34458950)
chr1 (104-135)||(6766369-6766400)
chr1 (49-84)||(14351954-14351989)
chr1 (1-64)||(31061600-31061662)
chr1 (91-133)||(9589631-9589673)
chr1 (107-137)||(11641062-11641092)
chr1 (1-35)||(33711192-33711226)
chr1 (107-137)||(40772009-40772039)
chr1 (6-85)||(21623680-21623756)
chr1 (107-136)||(36757482-36757511)
chr1 (107-136)||(40771768-40771797)
chr1 (104-133)||(52024025-52024054)
chr1 (104-132)||(16120439-16120467)
chr1 (66-118)||(40564241-40564293)
[»] chr5 (22 HSPs)
chr5 (1-132)||(12806999-12807130)
chr5 (1-132)||(25773649-25773780)
chr5 (1-132)||(30720638-30720769)
chr5 (1-132)||(40886756-40886887)
chr5 (1-133)||(10285203-10285335)
chr5 (1-132)||(36561245-36561376)
chr5 (1-135)||(37900770-37900904)
chr5 (1-121)||(7277568-7277688)
chr5 (4-94)||(25683377-25683467)
chr5 (17-133)||(16983257-16983375)
chr5 (1-134)||(39070881-39071014)
chr5 (1-129)||(734484-734611)
chr5 (1-84)||(30403107-30403191)
chr5 (7-82)||(23098386-23098461)
chr5 (1-133)||(11319558-11319690)
chr5 (88-132)||(15305221-15305265)
chr5 (104-136)||(18094315-18094347)
chr5 (1-72)||(1056428-1056498)
chr5 (91-134)||(15304820-15304863)
chr5 (24-133)||(11796450-11796559)
chr5 (104-132)||(8086031-8086059)
chr5 (104-132)||(9050799-9050827)
[»] scaffold0054 (1 HSPs)
scaffold0054 (4-133)||(45453-45582)
[»] scaffold1770 (1 HSPs)
scaffold1770 (1-132)||(170-293)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-117)||(411-525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-82)||(70874-70955)
[»] scaffold0257 (2 HSPs)
scaffold0257 (79-132)||(23467-23520)
scaffold0257 (91-132)||(23872-23913)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-66)||(65309-65375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (104-135)||(100881-100912)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 112 - 356
Target Start/End: Original strand, 54680613 - 54680857
Alignment:
Q  112 tattttgaaacggagggagtatatatatttatacacacgtatgaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttaccgga 211  Q
    |||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54680613 tattttgaaacggatggagtatatatatatacacacacgtatcaaatcaaataaatgtatttatgtgagatgatattgatatctgtatccatttaccgga 54680712  T
Q  212 ttctcgagtgatttgttggtttgatgcatgcatatgtcaatcattccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54680713 ttctcgagtgatttgttggtttgatgcatgcatatgtcaatcattccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaact 54680812  T
Q  312 gaaagtatatatattgattgaaataaattcacatgcttgtttctt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54680813 gaaagtatatatattgattgaaataaattcacatgcttgtttctt 54680857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 155 - 356
Target Start/End: Original strand, 54714682 - 54714881
Alignment:
Q  155 aaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttaccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatca 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||| ||    
T  54714682 aaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcgtgcat--gtcaacca 54714779  T
Q  255 ttccatactcgatttgagaccatgcaatgtgaaggatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttc 354  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54714780 ttccatactcgatttgagaccaggcaatgtgaaggatcacagctatgattgtgaactgaaagtatatatattgattgaaataaattcacatgcttgtttc 54714879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13364974 - 13364839
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13364974 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 13364875  T
Q  101 aaatgaacatgtattttgaaacggagggagtatata 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  13364874 aaatgaacatgtattttgaaacggagggagtatata 13364839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 36881411 - 36881277
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36881411 atgaaataataaataattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 36881314  T
Q  101 aaatgaacatgtattttgaaacggagggagtatatat 137  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  36881313 aaatggacatgtattttgaaacggagggagtaaatat 36881277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 19241814 - 19241946
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  19241814 atgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcacca 19241913  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  19241914 aaatggacatgtattttgaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 198986 - 198855
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  198986 atgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtcagtgcaatttctcca 198887  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  198886 aaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 46694256 - 46694387
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  46694256 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctcca 46694355  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||| | ||||||||||||||||||||||||||    
T  46694356 aaaaggacatgtattttgaaacggagggagta 46694387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 29375267 - 29375137
Alignment:
Q  3 gaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaa 102  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  29375267 gaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttactgcaatttctccaaa 29375168  T
Q  103 atgaacatgtattttgaaacggagggagtat 133  Q
    ||| |||||||||||||||||||||||||||    
T  29375167 atggacatgtattttgaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3383207 - 3383075
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3383207 atgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctcca 3383108  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||| |||||||||||||| |||||||    
T  3383107 aaatggacatatattttgaaacggaaggagtat 3383075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23088077 - 23088208
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  23088077 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttca 23088176  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||  |||| ||||||||||| |||||||||    
T  23088177 aaatagacatatattttgaaacagagggagta 23088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 43750268 - 43750135
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  43750268 atgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttggttactccaatttctcca 43750169  T
Q  101 aaatgaacatgtattttgaaacggagggagtata 134  Q
    ||||| ||||||||||||||||| ||||||||||    
T  43750168 aaatggacatgtattttgaaacgaagggagtata 43750135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 32835129 - 32835226
Alignment:
Q  28 atagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacgga 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||||||||||||||||||    
T  32835129 atagaaaacacacacataatttcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 13702884 - 13702768
Alignment:
Q  17 ttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattt 116  Q
    |||| |||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||   |||||||||    
T  13702884 ttaaaggtattatagaaaacaaacatataatttcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcatgtattt 13702785  T
Q  117 tgaaacggagggagtat 133  Q
    | ||| ||| |||||||    
T  13702784 taaaatggatggagtat 13702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 27707363 - 27707441
Alignment:
Q  54 aaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagggagta 27707441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 19911562 - 19911504
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtatatat 137  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19911562 cttggttactgcaatttctccaaaatgaacatgtattttgaaacggagggagtaaatat 19911504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 12094635 - 12094580
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  12094635 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtata 12094580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19897073 - 19897152
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttct 80  Q
    |||||||||||||  | |||||||||||||||||| ||||| | | |||||| ||||||||||||||||||||| |||||    
T  19897073 atgaaataataaaagagtaagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaatttatttgatttct 19897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 37293522 - 37293436
Alignment:
Q  47 tttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||||||||||| |||| ||||||||| || ||||||  ||| ||||||| ||||||| ||| ||||| |||||||||||||||||    
T  37293522 tttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattgtgaaacggagggagtat 37293436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37781068 - 37780996
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 73  Q
    ||||||||||||||  ||||  ||||||||||||| ||||||| | ||||||||||||||| |||||||||||    
T  37781068 atgaaataataaatggttaatagtattatagaaaaaacacacagaatttcatcaaaaataataaaatttattt 37780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 48820444 - 48820512
Alignment:
Q  47 tttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtatt 115  Q
    |||||||||||||||||||||||||||||||| |||| |   | |||||||||||||| ||||||||||    
T  48820444 tttcatcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaataaacatgtatt 48820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 44277455 - 44277509
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||  |||||||||||||||||  |||||||||||||||||||||||||||    
T  44277455 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtat 44277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 19912174 - 19912216
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagggagtat 19912216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 38806341 - 38806383
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagggagtat 38806383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 48963199 - 48963153
Alignment:
Q  89 gcaatttctccaaaatgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||  | |||||||||||||||||||||||||||    
T  48963199 gcaatttctccaaaatagatatgtattttgaaacggagggagtatat 48963153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 53559802 - 53559880
Alignment:
Q  47 tttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacgga 125  Q
    |||||||||||||||||| ||||||||| ||||||| |  ||| ||||||| |||||  |||| ||||| |||||||||    
T  53559802 tttcatcaaaaataacaacatttatttgttttcttgatatgtgtaatttcttcaaaagcaacaagtattgtgaaacgga 53559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 1455297 - 1455374
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    |||||||||||  | ||| | ||||||||| | ||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  1455297 aaataataaatggtgaagagaattatagaagaaacacaaataattttatcaaaaataacaaaatttatttgatttctt 1455374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 38805298 - 38805245
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  ||||||||||| |||||| ||||||||||| ||||||||||||||    
T  38805298 cttggttactgcaatttctctaaaatggacatgtattttaaaacggagggagta 38805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 21005321 - 21005290
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||||||||||||||    
T  21005321 tgaacatgtattttgaaacggagggagtatat 21005290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 27334759 - 27334728
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||||||||||||||    
T  27334759 tgaacatgtattttgaaacggagggagtatat 27334728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 39866169 - 39866138
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||||||||||||||    
T  39866169 tgaacatgtattttgaaacggagggagtatat 39866138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 4235803 - 4235750
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||    
T  4235803 cttggttagtgcaatttctccaaaacg-acatgtattttgaaacgaagtgagtat 4235750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 54721659 - 54721741
Alignment:
Q  207 ccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatcatt-ccatactcgatttgagaccatgcaatgtgaaggat 291  Q
    |||||||||||||| |||||| ||||||||||| ||||  ||||| |||| |||||||||||| || |||| ||| ||||||||||    
T  54721659 ccggattctcgagtaatttgt-ggtttgatgcacgcat--gtcaaccatttccatactcgattcgaaaccaggcattgtgaaggat 54721741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 12095423 - 12095464
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  12095423 aatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 44276816 - 44276775
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||| |||||| |||||||||||||||||||| |||||    
T  44276816 aatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 27010499 - 27010471
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  27010499 acatgtattttgaaacggagggagtatat 27010471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 54086684 - 54086581
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||| | | |||||||||||||||||| | ||| | | ||||||||| ||| |||| ||||||||| || |||||   ||| ||||||| ||    
T  54086684 atgaaataataa-tgagtaagggtattatagaaaaaatacaaagaatttcatcaataatgacaacatttatttgattccttggcatgtgtaatttcttca 54086586  T
Q  101 aaatg 105  Q
    |||||    
T  54086585 aaatg 54086581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11174369 - 11174500
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11174369 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 11174468  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  11174469 aaatgaacatgtattttgaaacggagggagta 11174500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2540077 - 2540209
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2540077 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 2540176  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||||||||| |||||    
T  2540177 aaatggacatgtattttgaaacggaggaagtat 2540209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40058449 - 40058581
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  40058449 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccg 40058548  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  40058549 aaatggacatgtattttgaaacggagggagtat 40058581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3585582 - 3585451
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3585582 atgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 3585483  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  3585482 aaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 37345702 - 37345571
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  37345702 atgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggttggtgcaatttcttca 37345603  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  37345602 aaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 11646471 - 11646603
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11646471 atgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 11646570  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||||| |||||||||    
T  11646571 aaatggacatgtattttgaaacgaagggagtat 11646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43275545 - 43275674
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43275545 atgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 43275642  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  43275643 aaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7147044 - 7146913
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  7147044 atgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttcttca 7146945  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||| ||||||    
T  7146944 aaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 40918877 - 40919009
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  40918877 atgaaataataaatgattaagggtattatagaaaacacaca--tgttttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 40918974  T
Q  101 aaatgaacatgtattttgaaacggagggagtatat 135  Q
    ||||| |||||||||||||||||||||||||||||    
T  40918975 aaatggacatgtattttgaaacggagggagtatat 40919009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 30999669 - 30999791
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30999669 atgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 30999766  T
Q  101 aaatgaacatgtattttgaaacgga 125  Q
    ||||  |||||||||||||||||||    
T  30999767 aaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36068211 - 36068080
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| || ||||| |||||    
T  36068211 atgaaataattaatgattaagggtattatagaaaacacacatatattttcattaaaaataacaaaatttatttggttttttggttagtacaattcctcca 36068112  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  36068111 aaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 27035127 - 27034997
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||| |||| ||||| ||||||||||||||| |||| ||||||||||||||||||  |||||||||||||    
T  27035127 atgaaataataaatggttaagggtattatagaaa-cacagacataatttcatcaaaaataaaaaaaattatttggtttcttggttactgcaatttctcca 27035029  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  27035028 aaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 20546435 - 20546564
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||| ||| ||||||||||  || |||||||||||||||||||||||||||  ||||||| ||| |||||||||| ||    
T  20546435 atgaaataataaattgttaagggtatcatataaaacacaca--taatttcatcaaaaataacaaaatttatttaatttcttgattgttgcaatttcttca 20546532  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| |||| |||||||||| ||||||||||    
T  20546533 aaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 28562553 - 28562420
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcc 99  Q
    ||||||| |||||| | |||||||||||||||||| | |||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| ||||||| |    
T  28562553 atgaaatcataaatgagtaagggtattatagaaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttc 28562454  T
Q  100 aaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||| ||| ||||||||||||||||| |||||    
T  28562453 aaaatggacaagtattttgaaacggaggaagtat 28562420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28326803 - 28326883
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||||||||||| ||||| ||||||| |||||   ||||||| |||||||||||||||||||||||||||| |||||||||    
T  28326803 atgaaataataaatagttaagagtattattgaaaa---acacataatttcatcaaaaataacaaaatttatttgatttcttggt 28326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13881100 - 13881174
Alignment:
Q  1 atgaaataataaataattaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaatttatttg 74  Q
    |||||||||||||| |||||||||||||||| |||| || |||| | ||||||||||||||||||||||||||||    
T  13881100 atgaaataataaatgattaagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaatttatttg 13881174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 41307961 - 41308017
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtatat 135  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  41307961 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtatat 41308017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 8697898 - 8697953
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  8697898 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtata 8697953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 45278701 - 45278754
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  45278701 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 10646645 - 10646591
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||| |||||    
T  10646645 cttggttactgcaatttctccaaaatggacatgtattttgaaacggaggaagtat 10646591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 28568032 - 28567918
Alignment:
Q  20 agggtattatagaaaac-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttg 118  Q
    ||||||||||||||||  ||||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| ||||||| ||||||| ||| ||||||||    
T  28568032 agggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttcttcaaaatggacaagtattttg 28567933  T
Q  119 aaacggagggagtat 133  Q
    ||||||||| |||||    
T  28567932 aaacggaggaagtat 28567918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 28575625 - 28575511
Alignment:
Q  20 agggtattatagaaaac-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttg 118  Q
    ||||||||||||||||  ||||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| ||||||| ||||||| ||| ||||||||    
T  28575625 agggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttcttcaaaatggacaagtattttg 28575526  T
Q  119 aaacggagggagtat 133  Q
    ||||||||| |||||    
T  28575525 aaacggaggaagtat 28575511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 35866742 - 35866616
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||| ||||| | | |||||| ||||||||||| |||||| |  |||||||||   |  |||||||  ||||    
T  35866742 aaataataaatgtttaagggtattatagaaaaaacacaaagaatttcatgaaaaataacaacatttatctaatttcttggtatatataatttctttaaaa 35866643  T
Q  104 tgaacatgtattttgaaacggagggag 130  Q
    || ||| ||||| ||||||||| ||||    
T  35866642 tggacaagtattgtgaaacggaaggag 35866616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 40486453 - 40486506
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40486453 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37510397 - 37510314
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||| ||||| |||||||||||||| ||||| | | | | | ||| || |||||||||||||||||||| ||||||||||    
T  37510397 atgaaatattaaatgattaagggtattattgaaaaaatagaaagaattttattaaaaataacaaaatttatttagtttcttggt 37510314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 41305803 - 41305761
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||| |||||| |||||||||||||||||||| ||||||    
T  41305803 aatttctctaaaatggacatgtattttgaaacggagagagtat 41305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10181003 - 10181074
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 73  Q
    ||||||||||||||  |||| ||||||||| |||| ||| || || ||| || ||||||||||||||||||||    
T  10181003 atgaaataataaatggttaacggtattataaaaaa-acaaacgtaattttataaaaaataacaaaatttattt 10181074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 36642093 - 36642121
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  36642093 tgaacatgtattttgaaacggagggagta 36642121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 40494621 - 40494649
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  40494621 acatgtattttgaaacggagggagtatat 40494649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10981639 - 10981506
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10981639 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 10981540  T
Q  101 aaatgaacatgtattttgaaacggagggagtata 134  Q
    ||||| ||||||||||||||||||||||||||||    
T  10981539 aaatggacatgtattttgaaacggagggagtata 10981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27813942 - 27813810
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27813942 atgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 27813843  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  27813842 aaatggacatgtattttgaaacggagggagtat 27813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 40349091 - 40348960
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  40349091 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctcca 40348992  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||| ||||||    
T  40348991 aaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36453270 - 36453399
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  36453270 atgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggttagtgcaatttctcca 36453369  T
Q  101 aaatgaacatgtattttgaaacggagggag 130  Q
    ||||| ||||||||||||||||||||||||    
T  36453370 aaatggacatgtattttgaaacggagggag 36453399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 47110577 - 47110451
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  47110577 aaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttattttgtttcttggttagtgcaatttctccaaaa 47110480  T
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    || ||||||||||||||| ||||||||||    
T  47110479 tggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 25614499 - 25614628
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  25614499 atgaaataataaatgattaagggtatttcagaaaacac--acatattttcatcaaaaataacaaaatttatttggttttttggttagtgcaatttctcca 25614596  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||| ||||||    
T  25614597 aaatggacatgtattttgaaacggaaggagta 25614628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3091648 - 3091565
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||||||||||  ||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||| ||| |||||    
T  3091648 atgaaataataaatggttaagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaatttatttgattttttggt 3091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7743543 - 7743625
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||||||||||| |||||||||||||  | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  7743543 atgaaataataaataattaacggtattatagaaagaa-acacataatttcatcaaaaataacaaaatttatttgatatcttggt 7743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 16360511 - 16360381
Alignment:
Q  3 gaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaa 102  Q
    ||||||||||||  ||||||||||||||||||| ||||| |   |||||||||||||||||||||||||||| |||  ||||  ||| ||||||  ||||    
T  16360511 gaaataataaatggttaagggtattatagaaaaaacacagaa--tttcatcaaaaataacaaaatttatttgattttctggtatgtgtaatttcctcaaa 16360414  T
Q  103 atgaacatgtattttgaaacggagggagtatat 135  Q
    |  |||| ||||| ||||||| | |||||||||    
T  16360413 agcaacaagtattatgaaacgaatggagtatat 16360381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 25060133 - 25060187
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  25060133 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 25060187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 2911548 - 2911603
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  2911548 cttggttactgcaatttctccaaaatggacatgtattttgaaatggagggagtata 2911603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 16662222 - 16662146
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    |||||||||||  |||||||||||||| |||| ||||| ||  |||||||||||||||||||||||||||  |||||||    
T  16662222 aaataataaatggttaagggtattataaaaaaaacacaaat--tttcatcaaaaataacaaaatttattttatttcttg 16662146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 17636582 - 17636506
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    |||||||||||  |||||||||||||| |||| ||||| ||  |||||||||||||||||||||||||||  |||||||    
T  17636582 aaataataaatggttaagggtattataaaaaaaacacaaat--tttcatcaaaaataacaaaatttattttatttcttg 17636506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27942185 - 27942256
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 72  Q
    ||||||||||||||  |||| |||||||||||||| ||||||||| | |||| |||||||| ||||||||||    
T  27942185 atgaaataataaatggttaaaggtattatagaaaaaacacacataatctcattaaaaataaaaaaatttatt 27942256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37983283 - 37983206
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    ||||||||||||||  |||| ||||||||| |||||| | |     |||||||||||||||||||||||||||| |||||||    
T  37983283 atgaaataataaatggttaaaggtattataaaaaacataaaa----tttcatcaaaaataacaaaatttatttgatttcttg 37983206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3498900 - 3498973
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 74  Q
    ||||||||||||||  ||||  ||||||||||||| | ||| | | |||||| ||||||||||||||| |||||    
T  3498900 atgaaataataaatggttaaaagtattatagaaaagatacaaaaaatttcataaaaaataacaaaattaatttg 3498973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 27021624 - 27021566
Alignment:
Q  6 ataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaa 66  Q
    ||||||||||||||||| |||||||||||  | | ||||| ||||||||||| ||||||||    
T  27021624 ataataaataattaaggttattatagaaa--aaagacatagtttcatcaaaagtaacaaaa 27021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 2910884 - 2910856
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  2910884 acatgtattttgaaacggagggagtatat 2910856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 42043916 - 42043888
Alignment:
Q  113 attttgaaacggagggagtatatatattt 141  Q
    |||||||||||||||||||||||||||||    
T  42043916 attttgaaacggagggagtatatatattt 42043888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1605710 - 1605577
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1605710 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 1605611  T
Q  101 aaatgaacatgtattttgaaacggagggagtata 134  Q
    ||||| ||||||||||||||||||||||||||||    
T  1605610 aaatggacatgtattttgaaacggagggagtata 1605577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 29260323 - 29260190
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29260323 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 29260224  T
Q  101 aaatgaacatgtattttgaaacggagggagtata 134  Q
    ||||| ||||||||||||||||||||||||||||    
T  29260223 aaatggacatgtattttgaaacggagggagtata 29260190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 30734629 - 30734753
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30734629 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 30734728  T
Q  101 aaatgaacatgtattttgaaacgga 125  Q
    ||||| |||||||||||||||||||    
T  30734729 aaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8626613 - 8626482
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  8626613 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttcttca 8626514  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  8626513 aaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 13757339 - 13757207
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13757339 atgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgtaatttctcca 13757240  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||| ||||||    
T  13757239 aaatggacatgtattttgaaacggagagagtat 13757207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 7761430 - 7761299
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7761430 atgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaatttctcca 7761333  T
Q  101 aaatgaacatgtattttgaaacggagggagtata 134  Q
    ||||| ||||||||||||||||||||||||||||    
T  7761332 aaatggacatgtattttgaaacggagggagtata 7761299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15064843 - 15064972
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  15064843 aaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttggttgctgcaatttctctaaaa 15064942  T
Q  104 tgaacatgtattttgaaacggagggagtat 133  Q
    || |||||||||||||||||||||||||||    
T  15064943 tggacatgtattttgaaacggagggagtat 15064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31559882 - 31559998
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||||||||    
T  31559882 atgaaataataaatgattaagggtattacagaaaacatacacatattttcatcaaaaataacaaaatttatttgattttttggttaatgcaatttctcca 31559981  T
Q  101 aaatgaacatgtatttt 117  Q
    ||||| |||||||||||    
T  31559982 aaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 8235755 - 8235624
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||| |||||||||||  |||||||||| ||    
T  8235755 atgaaataataaatgattaagggtattatagaaaacacacacataatatcataaaaaataacaaattttatttcgtttcttggttactgcaatttcttca 8235656  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||| |||  |||||||||    
T  8235655 aaatgtacatgtattttaaaatagagggagta 8235624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17942576 - 17942438
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatt--tatttggtttcttggttggtgcaatttctc 98  Q
    ||||||||||||||  |||||||||||||||| ||||| |||||| ||||||||||||||| ||||    |||||||||||||||||  |||||||||||    
T  17942576 atgaaataataaatggttaagggtattatagagaacacgcacataatttcatcaaaaataaaaaaaaaaatatttggtttcttggttactgcaatttctc 17942477  T
Q  99 caaaatgaacatgtattttgaaacggagggagtatatat 137  Q
     |||||| ||||||||||||||||| |||||||||||||    
T  17942476 aaaaatggacatgtattttgaaacgaagggagtatatat 17942438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4129558 - 4129435
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |        |||||||||||||    
T  4129558 atgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttac--------tgcaatttctcca 4129467  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    || || | ||||||||||||||||||||||||    
T  4129466 aagtggatatgtattttgaaacggagggagta 4129435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 30734772 - 30734879
Alignment:
Q  17 ttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattt 116  Q
    |||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||| || |||  |||||||||| ||||||| ||||||||||    
T  30734772 ttaagggtattatagaaaacacaca--taatttcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtattt 30734869  T
Q  117 tgaaacggag 126  Q
    ||||||||||    
T  30734870 tgaaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 21277580 - 21277659
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    ||||| || |||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||| ||||||    
T  21277580 atgaagtactaaataattaagggtattatagaaaa-acacataaattttcataaaaaataacaaaatttatttgatttctt 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 3798233 - 3798151
Alignment:
Q  2 tgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||||   ||||||| |||||||||| ||||| |||  ||||| ||||||||||||||||||||| ||| |||||    
T  3798233 tgaaataataaatgtgtaagggtgttatagaaaaaacacaaataacttcatgaaaaataacaaaatttatttgattttttggt 3798151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 19996715 - 19996769
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||  |||||||||||||||||  |||||||||||||||||||||||||||    
T  19996715 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagggagtat 19996769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 19996363 - 19996318
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtatata 136  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagggagtatata 19996318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 5297812 - 5297894
Alignment:
Q  207 ccggattctcgagtgatttgttggtttgatgcatgcatatgtcaatcattcc-atactcgatttgagaccatgcaatgtgaaggat 291  Q
    |||||||||||||| |||||| ||||||||||||||||  ||||| |||| | ||||||||||||| |||| ||| ||||||||||    
T  5297812 ccggattctcgagtaatttgt-ggtttgatgcatgcat--gtcaaccatttcgatactcgatttgaaaccaggcattgtgaaggat 5297894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 11370635 - 11370711
Alignment:
Q  5 aataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    ||||||||||  ||||| |||||||| |||| |||||   | | |||||||||||||||||||||||||| ||||||    
T  11370635 aataataaatggttaagagtattataaaaaaaacacaatgaatatcatcaaaaataacaaaatttatttgatttctt 11370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14287119 - 14286988
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||    |||||||||||||||||| |  |||| | |||||| ||||||||||||||||||||| ||| ||||   ||| |||||   ||    
T  14287119 atgaaataataaaggggtaagggtattatagaaaaaag-cacagaatttcataaaaaataacaaaatttatttgatttattggcatgtgtaattttctca 14287021  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    |||   ||| ||||| |||||||||||||||||    
T  14287020 aaaactacaagtattgtgaaacggagggagtat 14286988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 17942682 - 17942724
Alignment:
Q  94 ttctccaaaatgaacatgtattttgaaacggagggagtatata 136  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  17942682 ttctccaaaatggacaagtattatgaaacggagggagtatata 17942724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33845443 - 33845502
Alignment:
Q  13 ataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 74  Q
    ||||| ||||||| ||||||||| | |||  || ||||||||||||||||||||||||||||    
T  33845443 ataatcaagggtactatagaaaaaataca--taatttcatcaaaaataacaaaatttatttg 33845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 6563254 - 6563226
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  6563254 tgaacatgtattttgaaacggagggagta 6563226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 18668925 - 18668953
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  18668925 acatgtattttgaaacggagggagtatat 18668953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 20437042 - 20437014
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  20437042 acatgtattttgaaacggagggagtatat 20437014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 24623966 - 24623938
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  24623966 acatgtattttgaaacggagggagtatat 24623938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 24624175 - 24624203
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  24624175 tgaacatgtattttgaaacggagggagta 24624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 45 - 181
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 144  T
Q  101 aaatgaacatgtattttgaaacggagggagtatatat 137  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  145 aaatggacatgtattttgaaacggagagagtatatat 181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 21310556 - 21310424
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21310556 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 21310457  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  21310456 aaatggacatgtattttgaaacggagggagtat 21310424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 25704782 - 25704650
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25704782 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 25704683  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  25704682 aaatggacatgtattttgaaacggagggagtat 25704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14261175 - 14261043
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14261175 atgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 14261076  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  14261075 aaatggacatgtattttgaaacggagggagtat 14261043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 24706393 - 24706525
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24706393 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 24706492  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||||||| |||||||    
T  24706493 aaatggacatgtattttgaaacggatggagtat 24706525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12071692 - 12071560
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  12071692 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattggttagtgcaatttctcca 12071593  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  12071592 aaatggacatgtattttgaaacggagggagtat 12071560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 22321413 - 22321545
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22321413 atgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 22321512  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||||||| |||||||    
T  22321513 aaatggacatgtattttgaaacggaaggagtat 22321545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34324728 - 34324860
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaattt-atttggtttcttggttggtgcaatttctcc 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  34324728 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttggttagtgcaatttctcc 34324827  T
Q  100 aaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||| ||||||||||||||||||||||||||    
T  34324828 aaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40122631 - 40122763
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  40122631 atgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggttactgcaatttctcca 40122730  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  40122731 aaatggacatgtattttgaaacggagggagtat 40122763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 44568968 - 44568836
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  44568968 atgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggttagtgcaatttcttca 44568869  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||||||| |||||||    
T  44568868 aaatggacatgtattttgaaacggaaggagtat 44568836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21661681 - 21661813
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  21661681 atgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggttactgcaatttctcca 21661780  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||| |||||||||||    
T  21661781 aaatggacatgtattttgaaagggagggagtat 21661813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21670445 - 21670577
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  21670445 atgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggttactgcaatttctcca 21670544  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| ||||||||||||||| |||||||||||    
T  21670545 aaatggacatgtattttgaaagggagggagtat 21670577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 50767995 - 50767871
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |    
T  50767995 atgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgattagtgcaatttctcta 50767896  T
Q  101 aaatgaacatgtattttgaaacgga 125  Q
    ||||||| |||||||||||||||||    
T  50767895 aaatgaatatgtattttgaaacgga 50767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 20249162 - 20249289
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||  | |||||| |||||||    
T  20249162 aaataataaatggttaagggtattatagaaa-cacacacataatttcttcaaaaataacaaaatttatttggtttcttggttaatacaatttatccaaaa 20249260  T
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    || |||||||||||||||||||| |||||    
T  20249261 tggacatgtattttgaaacggagagagta 20249289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 31892365 - 31892240
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  | || ||||||||||||||||||    || ||||||||||||||| |||||||||||| ||||||||||  ||||||||||  |    
T  31892365 atgaaataataaatggtcaaaggtattatagaaaacaca----taatttcatcaaaaataataaaatttatttgatttcttggttactgcaatttcttta 31892270  T
Q  101 aaatgaacatgtattttgaaacggagggag 130  Q
    ||||||||||||||||||| ||||||||||    
T  31892269 aaatgaacatgtattttgatacggagggag 31892240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 1988155 - 1988065
Alignment:
Q  12 aataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaa 102  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||| |||  |||||||||||||||    
T  1988155 aatagttaagggtattatagaaaacacatacataatttcatcaaaaataataaaatttatttgatttcttagttactgcaatttctccaaa 1988065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 6129094 - 6129230
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||| ||||||| | ||| | | ||| |||||||||||||||||||||||| ||||||| |  ||| ||||||  ||    
T  6129094 atgaaataataaatgattaagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttgatatgtgtaatttcatca 6129193  T
Q  101 aaatgaacatgtattttgaaacggagggagtatatat 137  Q
    ||    | | ||||| |||||||||||||||||||||    
T  6129194 aaggcgataagtattatgaaacggagggagtatatat 6129230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20714494 - 20714577
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaa-cacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||||||||||  |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  20714494 atgaaataataaatggttaagg-tattatagaaaaacacacacatagtttcatcaaaaataacaaaatttatttgatttattggt 20714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 26676714 - 26676843
Alignment:
Q  3 gaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaa 102  Q
    |||||||||||| | |||||||||||||||||| ||||  | | |||||| |||||| |||| ||||||||| || ||||||  ||| ||||||| ||||    
T  26676714 gaaataataaatgagtaagggtattatagaaaaaacacgaagaatttcataaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaa 26676813  T
Q  103 atgaacatgtattttgaaacggagggagta 132  Q
    ||| | | ||||| |||||||||| |||||    
T  26676814 atggataagtattgtgaaacggagagagta 26676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32543611 - 32543532
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    |||||||||||||| ||||||||||||||| |||| ||||| | | ||||||||||| |||||||| ||||||||||||||    
T  32543611 atgaaataataaatgattaagggtattataaaaaa-acacaaagaatttcatcaaaattaacaaaaattatttggtttctt 32543532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 34284171 - 34284234
Alignment:
Q  9 ataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 72  Q
    ||||||||||||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||    
T  34284171 ataaataattaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttatt 34284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19692854 - 19692750
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| | ||||| |||||||||||| ||||| | | |||||| |||||| |||| ||||||||| |||||||||  ||  ||||||| ||    
T  19692854 atgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggtatgtataatttcttca 19692755  T
Q  101 aaatg 105  Q
    |||||    
T  19692754 aaatg 19692750  T

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Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19703439 - 19703335
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| | ||||| |||||||||||| ||||| | | |||||| |||||| |||| ||||||||| |||||||||  ||  ||||||| ||    
T  19703439 atgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggtatgtataatttcttca 19703340  T
Q  101 aaatg 105  Q
    |||||    
T  19703339 aaatg 19703335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 48652305 - 48652268
Alignment:
Q  47 tttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48652305 tttcatcaaaaataacaaaatttatttgatttcttggt 48652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21064891 - 21064834
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaata 60  Q
    ||||||||||||||| ||||| |||||||  |||| ||||||||| ||||||||||||||    
T  21064891 atgaaataataaatagttaagagtattat--aaaaaacacacataatttcatcaaaaata 21064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18507410 - 18507472
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaa 64  Q
    ||||||||||||||  | |||| |||||||||||| ||||||| | ||||||||||||||||||    
T  18507410 atgaaataataaattgtcaagg-tattatagaaaaaacacacaaaatttcatcaaaaataacaa 18507472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 12625485 - 12625514
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtat 133  Q
    ||||||||||||||||||||||||||||||    
T  12625485 tgaacatgtattttgaaacggagggagtat 12625514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 47386523 - 47386551
Alignment:
Q  107 acatgtattttgaaacggagggagtatat 135  Q
    |||||||||||||||||||||||||||||    
T  47386523 acatgtattttgaaacggagggagtatat 47386551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3519039 - 3518907
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3519039 atgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 3518940  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||||||||||||||||||||||||||    
T  3518939 aaatggacatgtattttgaaacggagggagtat 3518907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23366920 - 23366785
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23366920 atgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 23366821  T
Q  101 aaatgaacatgtattttgaaacggagggagtatata 136  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  23366820 aaatggacatgtattttgaaacggagggagtttata 23366785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 37673887 - 37674014
Alignment:
Q  5 aataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaat 104  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaat 37673986  T
Q  105 gaacatgtattttgaaacggagggagta 132  Q
    ||||||||||||||||||||||||||||    
T  37673987 gaacatgtattttgaaacggagggagta 37674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39938301 - 39938170
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39938301 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 39938202  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    |||||  |||||||||||||||||||||||||    
T  39938201 aaatggtcatgtattttgaaacggagggagta 39938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 1102634 - 1102503
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  1102634 atgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttactgcaatttctcca 1102535  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  1102534 aaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 12969888 - 12970017
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12969888 aaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaa 12969987  T
Q  104 tgaacatgtattttgaaacggagggagtat 133  Q
    || |||||||||||||||||||||||||||    
T  12969988 tggacatgtattttgaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1646418 - 1646317
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  1646418 atgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttagtttcttggttgctgcaatttctcca 1646321  T
Q  101 aaat 104  Q
    ||||    
T  1646320 aaat 1646317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22388281 - 22388335
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaa 55  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22388281 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaa 22388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 35179090 - 35179164
Alignment:
Q  10 taaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||| |||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||  |||||||||    
T  35179090 taaatagttaaggttattatagaaaaaacacacaaaatttcatcaaaaataacaaaatttatttcatttcttggt 35179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 34224378 - 34224431
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  34224378 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 19976459 - 19976380
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||||||||  |||||||||||||||||| | ||||||| ||| ||||||| || ||||||||||||| |||||||||    
T  19976459 aaataataaataggtaagggtattatagaaaaaa-acacataattttatcaaaagtaccaaaatttatttgatttcttggt 19976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14779908 - 14779838
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 73  Q
    |||||||||||||| | ||||  |||||||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  14779908 atgaaataataaatgagtaag--tattatagaaaaaacacaaataatttcatcaaaaataaaaaaatttattt 14779838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32840318 - 32840401
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaa---acacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    ||||||||||||||   ||| |||||||||||||   | | ||||| | |||||||||||||||||||||||||||| ||||||    
T  32840318 atgaaataataaatcgataatggtattatagaaagaaaaaaacacagaatttcatcaaaaataacaaaatttatttgatttctt 32840401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18078187 - 18078104
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||| ||||||||  | ||| |||||||||||||  |||| | |  ||||||||||||||||||||||||||| ||| |||||    
T  18078187 atgaattaataaatggtcaagagtattatagaaaatccacaaaaaaattcatcaaaaataacaaaatttatttgattttttggt 18078104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 39562037 - 39562104
Alignment:
Q  5 aataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttg 74  Q
    ||||||||||  ||||||||||||  ||||| ||| | ||| |||| |||||||||||||||||||||||    
T  39562037 aataataaatggttaagggtatta--gaaaaaacaaaaataatttcttcaaaaataacaaaatttatttg 39562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24777798 - 24777741
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaa 58  Q
    |||||||||||||||| ||||||||||||| |||| ||||| | | |||||| |||||    
T  24777798 atgaaataataaataaataagggtattataaaaaaaacacaaagaatttcataaaaaa 24777741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 2182988 - 2182960
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  2182988 tgaacatgtattttgaaacggagggagta 2182960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4917893 - 4917853
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacaca 41  Q
    |||||||||||||||||||||  |||||||||||| |||||    
T  4917893 atgaaataataaataattaagattattatagaaaaaacaca 4917853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40783803 - 40783935
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  40783803 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctcca 40783902  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||||||||||||||||||||||||||||    
T  40783903 aaatgaacatgtattttgaaacggagggagtat 40783935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 321757 - 321626
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  321757 atgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 321658  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||||||||||||||||||||||||||||||    
T  321657 aaatgaacatgtattttgaaacggagggagta 321626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23045425 - 23045556
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23045425 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 23045524  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  23045525 aaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 284464 - 284333
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  284464 atgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 284365  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  284364 aaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23526371 - 23526237
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  23526371 atgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttctcca 23526272  T
Q  101 aaatgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||| ||| |||||||||    
T  23526271 aaatgaacatgtattttgaaatggaaggagtatat 23526237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 24772054 - 24772182
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  24772054 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttcttcaaaa 24772153  T
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    || ||||||||||||||||||||||||||    
T  24772154 tggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 27211113 - 27211240
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  27211113 aaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaatttctccaaaa 27211212  T
Q  104 tgaacatgtattttgaaacggagggagt 131  Q
    || |||||||||||||||||||||||||    
T  27211213 tggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 47037998 - 47038127
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||    
T  47037998 atgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttgatttcttagttagtacaatttctcca 47038095  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||| ||||||    
T  47038096 aaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 46771768 - 46771644
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||  |||||||||||||    
T  46771768 atgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttggttactgcaatttctcca 46771669  T
Q  101 aaatgaacatgtattttgaaacgga 125  Q
    ||||| |||||||||||||||||||    
T  46771668 aaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 33082873 - 33082773
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  33082873 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaa 33082774  T
Q  104 t 104  Q
    |    
T  33082773 t 33082773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 52037268 - 52037382
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  ||||| |||||||||||||||||||  || ||| ||||||||||| |||||||||||||||| |||| |  ||||||||||| |    
T  52037268 atgaaataataaatggttaagagtattatagaaaacacaca--taattttatcaaaaataataaaatttatttggttttttggataatgcaatttctcta 52037365  T
Q  101 aaatgaacatgtatttt 117  Q
    ||||| |||||||||||    
T  52037366 aaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 1749435 - 1749357
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    |||||||||||  |||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  1749435 aaataataaatggttaatgctattatagaaaacacacatataatttcatcaaaaataacaaaatttatttgatttcttg 1749357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 51064925 - 51065033
Alignment:
Q  24 tattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacg 123  Q
    |||||||||||| ||||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| |||||||  |||||| ||| ||||| |||||||    
T  51064925 tattatagaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttctttaaaatggacaagtattgtgaaacg 51065024  T
Q  124 gagggagta 132  Q
    |||||||||    
T  51065025 gagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 3943113 - 3943058
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3943113 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtata 3943058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 40261419 - 40261549
Alignment:
Q  3 gaaataataaataattaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtg-caatttctcca 100  Q
    ||||||||||||  |||| | |||||||||||| | |||||  | ||||||||||| |||||||||||||||| |||||||||  |||  ||||||| ||    
T  40261419 gaaataataaatggttaatgatattatagaaaaaaacacacgcaatttcatcaaaattaacaaaatttatttgatttcttggtatgtgtaaatttct-ca 40261517  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    |||  |||||||||| ||||||||||||||||    
T  40261518 aaagcaacatgtattgtgaaacggagggagta 40261549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 1837978 - 1838053
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttctt 81  Q
    |||||||||||   |||||||||||||||||| |||||  || |||||||||||||||||||||||||||| ||||||    
T  1837978 aaataataaatgggtaagggtattatagaaaaaacaca--taatttcatcaaaaataacaaaatttatttgatttctt 1838053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 9588723 - 9588669
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  9588723 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagtat 9588669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 41959131 - 41959078
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  41959131 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 52478097 - 52478016
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||| ||||||  |||||| |||||||||||| ||||| |   |||||||||||||||||||||||||||| |||||||||    
T  52478097 atgaaatgataaatttttaaggttattatagaaaaaacacaaaa--tttcatcaaaaataacaaaatttatttgatttcttggt 52478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 3657192 - 3657125
Alignment:
Q  17 ttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||| |||||||||||| ||| ||| | |||||| ||||||||||||||||||||| |||||||||    
T  3657192 ttaaggttattatagaaaaaacatacaaaatttcattaaaaataacaaaatttatttgatttcttggt 3657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 31003935 - 31004012
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||  ||||||||||||||||||| | ||||||| |||||| ||||||   |||||||||||| |||||||||    
T  31003935 aaataataaatggttaagggtattatagaaaaaatacacatactttcattaaaaat---aaaatttatttgatttcttggt 31004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 44227889 - 44227847
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagggagtat 44227847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 7765141 - 7765072
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 73  Q
    |||||||||||  ||| ||||||||  ||||||||||| ||| ||||| |||||||||||||||||||||    
T  7765141 aaataataaatggttatgggtattacggaaaacacacatataatttcaccaaaaataacaaaatttattt 7765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 13984991 - 13985044
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||| ||||||    
T  13984991 cttggttactgcaatttctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27143157 - 27143239
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaaca-cacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    |||||||||||||| ||||||  |||||||||||| | | |||  | |||| ||||||||||||||||||||||| |||||||    
T  27143157 atgaaataataaatgattaagaatattatagaaaaaaactcacggaatttcctcaaaaataacaaaatttatttgatttcttg 27143239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 41959809 - 41959851
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagggagtat 41959851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 44228238 - 44228284
Alignment:
Q  89 gcaatttctccaaaatgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||||    
T  44228238 gcaatttctccaaaatggacatgtattttgaaatggaggtagtatat 44228284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 3943763 - 3943804
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 18396803 - 18396754
Alignment:
Q  24 tattatagaaaacacacacatattttcatcaaaaataacaaaatttattt 73  Q
    ||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  18396803 tattatagaaaaaccacacataatttcataaaaaataacaaaatttattt 18396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 40562733 - 40562797
Alignment:
Q  7 taataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 72  Q
    ||||||||  |||| |||||||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacacatatataattt-atcaaaaataacaaaatttatt 40562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 34458869 - 34458950
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||||| | ||||| |||||||||||  | ||||| | |||||| |||||||  |||||||||||| |||||||||    
T  34458869 atgaaataataaattagtaaggttattatagaaa--aaacacagaatttcataaaaaatagaaaaatttatttgatttcttggt 34458950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 6766400 - 6766369
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||||||||||||||    
T  6766400 tgaacatgtattttgaaacggagggagtatat 6766369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 14351954 - 14351989
Alignment:
Q  49 tcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    |||||||||||||||||||||||||| |||||||||    
T  14351954 tcatcaaaaataacaaaatttatttgttttcttggt 14351989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31061600 - 31061662
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaa 64  Q
    ||||||||||||||  ||| ||||||||| ||||| ||||||||| |||||| |||||||||||    
T  31061600 atgaaataataaatggtta-gggtattatggaaaaaacacacataatttcataaaaaataacaa 31061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 9589631 - 9589673
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtat 133  Q
    |||||||| |||||  |||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagggagtat 9589673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 11641092 - 11641062
Alignment:
Q  107 acatgtattttgaaacggagggagtatatat 137  Q
    |||||||||||||||||||||||||||||||    
T  11641092 acatgtattttgaaacggagggagtatatat 11641062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33711226 - 33711192
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaa 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  33711226 atgaaataataaataattaagggtattataaaaaa 33711192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 40772009 - 40772039
Alignment:
Q  107 acatgtattttgaaacggagggagtatatat 137  Q
    |||||||||||||||||||||||||||||||    
T  40772009 acatgtattttgaaacggagggagtatatat 40772039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 21623680 - 21623756
Alignment:
Q  6 ataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 85  Q
    |||||||||| |||||||||||| ||||||   | ||| | ||||||||||| |||||||||||||  | ||||||||||    
T  21623680 ataataaatatttaagggtattaaagaaaa---agacacactttcatcaaaagtaacaaaatttatcggttttcttggtt 21623756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 36757511 - 36757482
Alignment:
Q  107 acatgtattttgaaacggagggagtatata 136  Q
    ||||||||||||||||||||||||||||||    
T  36757511 acatgtattttgaaacggagggagtatata 36757482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 136
Target Start/End: Complemental strand, 40771797 - 40771768
Alignment:
Q  107 acatgtattttgaaacggagggagtatata 136  Q
    ||||||||||||||||||||||||||||||    
T  40771797 acatgtattttgaaacggagggagtatata 40771768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 133
Target Start/End: Complemental strand, 52024054 - 52024025
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtat 133  Q
    ||||||||||||||||||||||||||||||    
T  52024054 tgaacatgtattttgaaacggagggagtat 52024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 16120467 - 16120439
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  16120467 tgaacatgtattttgaaacggagggagta 16120439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 40564241 - 40564293
Alignment:
Q  66 atttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttg 118  Q
    ||||||||||||||||||||  ||| |||| ||||||||| |||| |||||||    
T  40564241 atttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 12806999 - 12807130
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12806999 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaatttctcca 12807098  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  12807099 aaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 25773780 - 25773649
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25773780 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctcca 25773681  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  25773680 aaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30720638 - 30720769
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30720638 atgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctcca 30720737  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||||||||||    
T  30720738 aaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 40886756 - 40886887
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  40886756 atgaaataataaatgattaagggtattatagaaaatacacacatattttcatcaaaaataacaaaatttattcgatttcttggttagtgcaatttctcca 40886855  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||||||||||||||||||||||| ||||||    
T  40886856 aaatgaacatgtattttgaaacggatggagta 40886887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10285203 - 10285335
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  10285203 atgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttcttggttaatgcaatttctcca 10285302  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||  |||| ||||||||||||||||||||||    
T  10285303 aaatagacatctattttgaaacggagggagtat 10285335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 36561245 - 36561376
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| || |    
T  36561245 atgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgattactgcaatttttcta 36561344  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    ||||| ||||||||||||||||||| ||||||    
T  36561345 aaatggacatgtattttgaaacggatggagta 36561376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37900770 - 37900904
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||  |||||||||||||    
T  37900770 atgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaatttctcca 37900869  T
Q  101 aaatgaacatgtattttgaaacggagggagtatat 135  Q
    ||||| |  ||||||||||||||||||||||||||    
T  37900870 aaatggatgtgtattttgaaacggagggagtatat 37900904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 7277568 - 7277688
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||  | |||||||||||    
T  7277568 atgaaataataaatggttaaaggtattatagaaaacacacacataatttgatcaaaaataacaaaatttatttggtttattggttactccaatttctcca 7277667  T
Q  101 aaatgaacatgtattttgaaa 121  Q
    ||||  |||||||||||||||    
T  7277668 aaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 25683377 - 25683467
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatt 94  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||    
T  25683377 aaataataaatggttaagggtattatagaaaacacacacataattttatcaaaaataacaaaatttatttggtttcttggttattgcaatt 25683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 16983375 - 16983257
Alignment:
Q  17 ttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat--ttatttggtttcttggttggtgcaatttctccaaaatgaacatgtat 114  Q
    ||||||||||| ||||||| ||||| ||  |||||||||||| || ||||   ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  16983375 ttaagggtattgtagaaaaaacacatatcatttcatcaaaaaaaaaaaaaaaattatttggtttcttggttactgcaatttctccaaaatggacatgtat 16983276  T
Q  115 tttgaaacggagggagtat 133  Q
    |||||||| ||||||||||    
T  16983275 tttgaaacagagggagtat 16983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39071014 - 39070881
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacaca-catattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcc 99  Q
    |||||||||||||| | |||||||||||||||||| ||||| || |||| |||||||||| |||| ||||||||| || |||  |  ||| ||||||| |    
T  39071014 atgaaataataaatgagtaagggtattatagaaaaaacacaacagattt-catcaaaaatgacaacatttatttgattccttaatatgtgtaatttcttc 39070916  T
Q  100 aaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||||| ||||| ||||||||||||||||||    
T  39070915 aaaatgaacaagtattgtgaaacggagggagtata 39070881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 734484 - 734611
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| | |||||||||||||||||| ||||| | | ||||||||| ||| |||||||||||||| ||  |||||  | | ||||||| ||    
T  734484 atgaaataataaatgagtaagggtattatagaaaa-acacaaagaatttcatcaataatgacaaaatttatttgattctttggtatgagtaatttcttca 734582  T
Q  101 aaatgaacatgtattttgaaacggaggga 129  Q
    ||||| ||| ||||| |||||||||||||    
T  734583 aaatggacaagtattgtgaaacggaggga 734611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30403107 - 30403191
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacaca-cacatattttcatcaaaaataacaaaatttatttggtttcttggt 84  Q
    ||||||||| |||| |||||| ||||||||||||| | | |||| | ||||||||||||||||||||||||||||||||||||||    
T  30403107 atgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttggt 30403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 23098386 - 23098461
Alignment:
Q  7 taataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    ||||||||  ||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  23098386 taataaatggttaagggtattataggaaacatgcacataatttcatcaaaaataacaaaatttatttagtttcttg 23098461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 11319690 - 11319558
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| | |||||||||||||||||| | ||| | | |||||| |||||| |||| ||||||||| ||  || ||  ||| ||||||| ||    
T  11319690 atgaaataataaatgagtaagggtattatagaaaaaaaacaaagaatttcataaaaaattacaacatttatttgattcattagtatgtgtaatttcttca 11319591  T
Q  101 aaatgaacatgtattttgaaacggagggagtat 133  Q
    ||||| |||  |||| ||||||||||| |||||    
T  11319590 aaatggacaaatattgtgaaacggaggaagtat 11319558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 15305221 - 15305265
Alignment:
Q  88 tgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  15305221 tgcaatttctccaaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 18094315 - 18094347
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatata 136  Q
    |||||||||||||||||||||||||||||||||    
T  18094315 tgaacatgtattttgaaacggagggagtatata 18094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1056428 - 1056498
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatt 72  Q
    |||||||||||||| || ||  ||||||||||||| ||||| | | |||||| |||||||||||||||||||    
T  1056428 atgaaataataaatgatcaatagtattatagaaaa-acacaaagaatttcattaaaaataacaaaatttatt 1056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 15304863 - 15304820
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagtata 134  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||    
T  15304863 aatttctctaaaatggacatgtattttaaaacggagggagtata 15304820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 11796559 - 11796450
Alignment:
Q  24 tattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaatgaacatgtattttgaaacg 123  Q
    |||||||||| | ||||| | | |||||||||||||||||||||| ||||  |||||||||   || ||||||| |||||   ||| ||| | ||||| |    
T  11796559 tattatagaacaaacacatagaatttcatcaaaaataacaaaattaatttaatttcttggtatctgtaatttcttcaaaaatgacaagtagtgtgaaaag 11796460  T
Q  124 gagggagtat 133  Q
    ||||||||||    
T  11796459 gagggagtat 11796450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 8086059 - 8086031
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  8086059 tgaacatgtattttgaaacggagggagta 8086031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 9050799 - 9050827
Alignment:
Q  104 tgaacatgtattttgaaacggagggagta 132  Q
    |||||||||||||||||||||||||||||    
T  9050799 tgaacatgtattttgaaacggagggagta 9050827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 45582 - 45453
Alignment:
Q  4 aaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 103  Q
    |||||||||||  ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45582 aaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctccaaaa 45483  T
Q  104 tgaacatgtattttgaaacggagggagtat 133  Q
    ||||||||||||||||||||||||||||||    
T  45482 tgaacatgtattttgaaacggagggagtat 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 293 - 170
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |        |||||||||||||    
T  293 atgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttac--------tgcaatttctcca 202  T
Q  101 aaatgaacatgtattttgaaacggagggagta 132  Q
    || || | ||||||||||||||||||||||||    
T  201 aagtggatatgtattttgaaacggagggagta 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 411 - 525
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttggtgcaatttctcca 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||  || ||| |||||||||||||||||||||||| ||| ||| ||  ||||||||| |||    
T  411 atgaaataataaatgattaagggtattataaaaaacacaca--taattttatcaaaaataacaaaatttatttgattttttgattactgcaatttcgcca 508  T
Q  101 aaatgaacatgtatttt 117  Q
    |||||||||||||||||    
T  509 aaatgaacatgtatttt 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 70955 - 70874
Alignment:
Q  1 atgaaataataaataattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttg 82  Q
    ||||||||||||||  |||||||| ||| |||||| ||||||| | |||||||||||||||||||||||||||| |||||||    
T  70955 atgaaataataaatggttaagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaatttatttgatttcttg 70874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 23520 - 23467
Alignment:
Q  79 cttggttggtgcaatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  23520 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 23872 - 23913
Alignment:
Q  91 aatttctccaaaatgaacatgtattttgaaacggagggagta 132  Q
    |||||||| |||||| ||||||||||||||||||| ||||||    
T  23872 aatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 65309 - 65375
Alignment:
Q  1 atgaaataataaataattaagggtattatag-aaaacacacacatattttcatcaaaaataacaaaa 66  Q
    ||||||||||||||  ||||||||||||||| |||| ||||| ||| ||||||||||||||| ||||    
T  65309 atgaaataataaatggttaagggtattatagaaaaaaacacatataatttcatcaaaaataataaaa 65375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 135
Target Start/End: Original strand, 100881 - 100912
Alignment:
Q  104 tgaacatgtattttgaaacggagggagtatat 135  Q
    ||||||||||||||||||||||||||||||||    
T  100881 tgaacatgtattttgaaacggagggagtatat 100912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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