View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11218_low_22 (Length: 365)

Name: NF11218_low_22
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11218_low_22
NF11218_low_22
[»] chr7 (6 HSPs)
chr7 (132-347)||(8024737-8024952)
chr7 (1-52)||(8024633-8024684)
chr7 (89-158)||(3412258-3412327)
chr7 (94-156)||(37808174-37808236)
chr7 (92-153)||(27746750-27746811)
chr7 (104-136)||(21924373-21924405)
[»] chr5 (2 HSPs)
chr5 (189-347)||(21545932-21546090)
chr5 (89-131)||(3400384-3400426)
[»] chr4 (5 HSPs)
chr4 (243-327)||(28151825-28151909)
chr4 (92-154)||(40303615-40303677)
chr4 (94-156)||(13632513-13632575)
chr4 (117-157)||(23806384-23806424)
chr4 (89-158)||(41668990-41669059)
[»] chr2 (2 HSPs)
chr2 (89-162)||(2393752-2393825)
chr2 (121-164)||(2314422-2314465)
[»] chr1 (2 HSPs)
chr1 (93-158)||(9979038-9979103)
chr1 (95-163)||(6586990-6587058)
[»] chr3 (3 HSPs)
chr3 (87-162)||(33509095-33509170)
chr3 (92-157)||(39328268-39328333)
chr3 (94-158)||(54321368-54321432)
[»] chr6 (1 HSPs)
chr6 (89-163)||(14333829-14333903)
[»] scaffold0027 (1 HSPs)
scaffold0027 (87-116)||(34544-34573)
[»] chr8 (2 HSPs)
chr8 (93-158)||(10468633-10468698)
chr8 (126-158)||(3415853-3415885)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 8024737 - 8024952
Alignment:
Q  132 tcctctttgccctgcctcagatacggctctgattaggttcaacaacaatacaaaatctatgatatttgagtataaaagttacctgataaagaataatgca 231  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8024737 tcctctttaccctgcctcagatacggccctgattaggttcaagaacaatacaaaatctatgatatttgagtataaaagttacccgataaagaataatgca 8024836  T
Q  232 atccttttcgtaggtaaatcttttgtgagacactatcatgtggttgatttctactatgtgttaccacaaatttgttgcctaatgattctctatgttcaat 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8024837 atccttttcgtaggtaaatcttttgtgagacactatcatgtggttgatttctactatgtgttaccacaaatttgttgcctaatgattttctatgttcaat 8024936  T
Q  332 tattgcatccccaaat 347  Q
    ||||||||||||||||    
T  8024937 tattgcatccccaaat 8024952  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8024633 - 8024684
Alignment:
Q  1 tggaaacaaaacccattattaacaagaacatctccttttaaaaactaagcaa 52  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  8024633 tggaaacaaaacccattactaacaagcacatctccttttaaaaactaagcaa 8024684  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 3412258 - 3412327
Alignment:
Q  89 gggcccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggc 158  Q
    |||||||||||  |||||||||||||| | | ||||| ||||| |||||| |||||||||||||||||||    
T  3412258 gggcccaaattctgtacttattttttggaacctaggacggtcgccctcttcgccctgcctcagatacggc 3412327  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 37808174 - 37808236
Alignment:
Q  94 caaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacg 156  Q
    ||||||||||||||||||||||  | ||||||  ||||||||||||||| ||||||| |||||    
T  37808174 caaatttcgtacttattttttggggtttaggacagtcgtcctctttgccatgcctcaaatacg 37808236  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 27746750 - 27746811
Alignment:
Q  92 cccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagat 153  Q
    |||||||||||||||| |||||| | ||||| || ||||| ||||||  |||||||||||||    
T  27746750 cccaaatttcgtacttctttttttaggcttaagacggtcgccctcttcaccctgcctcagat 27746811  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 21924405 - 21924373
Alignment:
Q  104 acttattttttgaagcttaggatggtcgtcctc 136  Q
    ||||||||||||| |||||||||||||||||||    
T  21924405 acttattttttgaggcttaggatggtcgtcctc 21924373  T

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Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 189 - 347
Target Start/End: Original strand, 21545932 - 21546090
Alignment:
Q  189 tatgatatttgagtataaaagttacctgataaagaataatgcaatccttttcgtaggtaaatcttttgtgagacactatcatgtggttgatttctactat 288  Q
    |||| |||||||||| |||  |||||||||||||||||||||||||| ||| |||||||||| || |||| ||||||||||||||||||||||||  |||    
T  21545932 tatggtatttgagtaaaaattttacctgataaagaataatgcaatccattttgtaggtaaattttctgtgcgacactatcatgtggttgatttctgttat 21546031  T
Q  289 gtgttaccacaaatttgttgcctaatgattctctatgttcaattattgcatccccaaat 347  Q
      | ||||||| ||||||| || ||||||||||||||||| ||| |||||| |||||||    
T  21546032 tggctaccacatatttgttacccaatgattctctatgttctattcttgcattcccaaat 21546090  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 3400426 - 3400384
Alignment:
Q  89 gggcccaaatttcgtacttattttttgaagcttaggatggtcg 131  Q
    |||||||||||||||||||||||||||  || |||||||||||    
T  3400426 gggcccaaatttcgtacttattttttggggcctaggatggtcg 3400384  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 28151909 - 28151825
Alignment:
Q  243 aggtaaatcttttgtgagacactatcatgtggttgatttctactatgtgttaccacaaatttgttgcctaatgattctctatgtt 327  Q
    |||| ||||||||| ||||||||||||| |||||||||||| ||||| | ||||||| ||||||| |||||||||||||||||||    
T  28151909 aggtgaatcttttgggagacactatcatatggttgatttctgctatgagctaccacatatttgttacctaatgattctctatgtt 28151825  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 40303615 - 40303677
Alignment:
Q  92 cccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagata 154  Q
    |||||||||||||||||||||||||  ||||||  ||||| |||||| |||||||||||||||    
T  40303615 cccaaatttcgtacttattttttgagacttagggcggtcgccctcttcgccctgcctcagata 40303677  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 13632575 - 13632513
Alignment:
Q  94 caaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacg 156  Q
    |||||| |||| ||||||||||| | ||||| |||||||||||||  ||||||||||||||||    
T  13632575 caaattacgtatttattttttgaggtttagggtggtcgtcctcttcaccctgcctcagatacg 13632513  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 23806384 - 23806424
Alignment:
Q  117 agcttaggatggtcgtcctctttgccctgcctcagatacgg 157  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  23806384 agcttaggatggtcgccctcttcgccctgcctcagatacgg 23806424  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 41668990 - 41669059
Alignment:
Q  89 gggcccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggc 158  Q
    ||||||||||||  |||||||||||||  || ||||  ||||  |||||| |||||||||||||||||||    
T  41668990 gggcccaaattttctacttattttttggggcctagggcggtctccctcttcgccctgcctcagatacggc 41669059  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 2393825 - 2393752
Alignment:
Q  89 gggcccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggctctg 162  Q
    ||||||||||||||||||||||||||| |||||||   ||||| |||||| |||||||||||||||||||||||    
T  2393825 gggcccaaatttcgtacttattttttggagcttagagcggtcgccctcttcgccctgcctcagatacggctctg 2393752  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 2314422 - 2314465
Alignment:
Q  121 taggatggtcgtcctctttgccctgcctcagatacggctctgat 164  Q
    |||||||||||||||| || |||||||||||||||||| |||||    
T  2314422 taggatggtcgtcctccttaccctgcctcagatacggccctgat 2314465  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 9979038 - 9979103
Alignment:
Q  93 ccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggc 158  Q
    ||||||||||||||||||||||||| | ||||  ||||| ||||||  |||| |||||||||||||    
T  9979038 ccaaatttcgtacttattttttgaatcatagggcggtcgccctcttcaccctacctcagatacggc 9979103  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 6587058 - 6586990
Alignment:
Q  95 aaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggctctga 163  Q
    ||||||||||||||||||||   | |||||| | ||| |||||| |||||| |||||||||||| ||||    
T  6587058 aaatttcgtacttatttttttgggtttaggacgatcgccctcttcgccctgtctcagatacggccctga 6586990  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 33509095 - 33509170
Alignment:
Q  87 ttgggcccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggctctg 162  Q
    ||||||| |||||| ||||||||||| ||  ||||||||||||||  || || |||||| ||||||||||| ||||    
T  33509095 ttgggcctaaattttgtacttattttgtggggcttaggatggtcgctctattcgccctgtctcagatacggttctg 33509170  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 39328333 - 39328268
Alignment:
Q  92 cccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacgg 157  Q
    ||||||||||| ||||| ||||| | ||||||| |||||| ||| || |||||| |||||||||||    
T  39328333 cccaaatttcgaacttagttttttaggcttagggtggtcgccctattcgccctgactcagatacgg 39328268  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 54321432 - 54321368
Alignment:
Q  94 caaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggc 158  Q
    ||||||| |||||||||||||| |||  | |  ||||| |||||| |||||||||||||||||||    
T  54321432 caaatttagtacttattttttggagcccatggcggtcgccctcttcgccctgcctcagatacggc 54321368  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 14333903 - 14333829
Alignment:
Q  89 gggcccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggctctga 163  Q
    ||||||||||||||||||||||||||   |||| ||  ||||| |||||| | ||||| ||||||||||| ||||    
T  14333903 gggcccaaatttcgtacttatttttttgggctttgggcggtcgccctcttcgtcctgcttcagatacggccctga 14333829  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 34544 - 34573
Alignment:
Q  87 ttgggcccaaatttcgtacttattttttga 116  Q
    ||||||||||||||||||||||||||||||    
T  34544 ttgggcccaaatttcgtacttattttttga 34573  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 10468698 - 10468633
Alignment:
Q  93 ccaaatttcgtacttattttttgaagcttaggatggtcgtcctctttgccctgcctcagatacggc 158  Q
    |||||||||||||||| |||||||||| ||||   |||| |||||| ||||| || ||||||||||    
T  10468698 ccaaatttcgtacttaatttttgaagcctagggcagtcgccctcttcgccctaccccagatacggc 10468633  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 3415885 - 3415853
Alignment:
Q  126 tggtcgtcctctttgccctgcctcagatacggc 158  Q
    ||||||||||||||||||||||| |||||||||    
T  3415885 tggtcgtcctctttgccctgccttagatacggc 3415853  T

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