View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11218_low_24 (Length: 339)
Name: NF11218_low_24
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37484856 - 37485185
Alignment:
| Q |
1 |
cacaactatgactttgaccctttagccaattccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgnnnnnnnacaccaatgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37484856 |
cacaactatgactttgaccctttagccaattccaaagcttcttgcttggtttcctctgatcctgaattatcaaagcgtatgtttttttacaccaatgata |
37484955 |
T |
|
| Q |
101 |
tattggatgtttcaaatgctttgaaagaatatgaagttgtttatttggcagcacttgtaggaatgagtgttgaggaaaagaataggatcattgagcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37484956 |
tattggatgtttcaaatgctttgaaagaatatgaagttgtttatttggcagcacttgtgggaatgagtgttgaggaaaagaataggatcattgagcattt |
37485055 |
T |
|
| Q |
201 |
ggctaagtacatggcaccaggagcactcctgatgctcaggagtgctcacggtgctcgtgcttttttgtatccggttgttgataccaatgatcttcgaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37485056 |
ggctaagtacatggcaccaggagcactcctgatgctcaggagtgctcacggtgcgcgtgcttttttgtatccggttgttgataccaatgatcttcgaggc |
37485155 |
T |
|
| Q |
301 |
tttgaggtgctctcggtgtttcatccaacg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37485156 |
tttgaggtgctctcggtgtttcatccaacg |
37485185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 314
Target Start/End: Original strand, 46098136 - 46098405
Alignment:
| Q |
45 |
cttggtttcctctgatcctgaattatcaaagcgtatgnnnnnnnacaccaatgatatattggatgtttcaaatgctttgaaagaatatgaagttgtttat |
144 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||| ||||||||||||||||||| || ||||||| ||||||||| |||||| ||||||| |
|
|
| T |
46098136 |
cttggtttcatctgatcctgacttgtcaaaccgtatggtttttcacaccaatgatatattggacgtgtcaaatgatttgaaagactatgaaattgtttac |
46098235 |
T |
|
| Q |
145 |
ttggcagcacttgtaggaatgagtgttgaggaaaagaataggatcattgagcatttggctaagtacatggcaccaggagcactcctgatgctcaggagtg |
244 |
Q |
| |
|
|| || || || || || ||| |||||||| ||| | |||||||| || |||| ||| ||||||| ||||||||||| || ||| | ||||||| |
|
|
| T |
46098236 |
ttagctgccctggtcggtatggacaaggaggaaaaaaatcgaatcattgatcacttggggaagcacatggccccaggagcacttcttatgttaaggagtg |
46098335 |
T |
|
| Q |
245 |
ctcacggtgctcgtgcttttttgtatccggttgttgataccaatgatcttcgaggctttgaggtgctctc |
314 |
Q |
| |
|
||||||| |||||||||||| | ||||| || ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
46098336 |
ctcacggggctcgtgcttttctctatccagtggttgaagcttctgatcttcgaggctttgaggtcctctc |
46098405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University