View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11218_low_27 (Length: 325)
Name: NF11218_low_27
Description: NF11218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11218_low_27 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 28679 - 28372
Alignment:
| Q |
18 |
ggtatcacattcaagaggagtcacaacaacctcaaaaacaaacagttgtgtgggttgccaacagagacaaccctgtagctgttgattccattggagtttt |
117 |
Q |
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| T |
28679 |
ggtatcacattcaagaggagtcacaacaacctcaaaaacaaacagtggtgtgggttgccaacagagacaaccctgtagctgttgattccattggagtttt |
28580 |
T |
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| Q |
118 |
cgaaatagcagaggatgggaatctcgtagttttagacacatctggtaatgaaaaaaggtactggttttctaattccaattccaaaatcaaagactcttct |
217 |
Q |
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| T |
28579 |
ccaaatagcagaggatgggaatctcgtagttttagacacatccggtaatgaaaaaaggtactggttttctaattccagttccaaaatcaaagactcttct |
28480 |
T |
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| Q |
218 |
agtttttcacctaaaaacaggacagcgaaactcatggattctggtaaccttgtgttatatgacgatgaactcatggaagtgaaactgtgggagagctttg |
317 |
Q |
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| T |
28479 |
agtttttcacctaaaatcagaacagtgaaactcatggattctggtaaccttgttttatatgacgatgaactcatggaagtgaaactgtgggagagctttg |
28380 |
T |
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| Q |
318 |
aaaatcca |
325 |
Q |
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| T |
28379 |
aaaatcca |
28372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 3859 - 3718
Alignment:
| Q |
18 |
ggtatcacattcaagaggagtcacaacaacctcaaaaacaaacagttgtgtgggttgccaacagagacaaccctgtagctgttgattccattggagtttt |
117 |
Q |
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| T |
3859 |
ggtatcacatgcaagaggggtcgcagcaacctcaaaaacaaacagtggtgtgggttgccaacagagacagccctgtagctgttggttccattggagtttt |
3760 |
T |
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| Q |
118 |
cgaaatagcagaggatgggaatctcgtagttttagacacatc |
159 |
Q |
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| T |
3759 |
ccatatagcagaggatgggaatcttgaagttgttgacacatc |
3718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 3667 - 3615
Alignment:
| Q |
225 |
cacctaaaaacaggacagcgaaactcatggattctggtaaccttgtgttatat |
277 |
Q |
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| T |
3667 |
cacctaaaaacaggacggtgaaactcatggattctggtaatcttgtgttatat |
3615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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